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missing submodules in install

Status: Open.

#1334 In sgkit-dev/sgkit;

· alxsimon opened on Sep 7, 2025

Hi memory usage when calculating chunked Hamilton-Kerr relationship matrix

bugSomething isn't workingSomething isn't working

Status: Open.

#1333 In sgkit-dev/sgkit;

· timothymillar opened on Sep 3, 2025

Dead link

Status: Open.

#1332 In sgkit-dev/sgkit;

· mattlyonofh opened on Sep 1, 2025

Remove (c)bgen dependency for unpack_variables?

Status: Open.

#1331 In sgkit-dev/sgkit;

· jpfeuffer opened on Aug 6, 2025

Support <code>bcftools</code>-style filtering

core operationsIssues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.Issues related to domain-specific functionality such as LD pruning, PCA, association testing, etc.

Status: Open.

#1329 In sgkit-dev/sgkit;

· tomwhite opened on Jul 1, 2025

Unpin scipy when statsmodels&gt;0.14.4 is released

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#1323 In sgkit-dev/sgkit;

· tomwhite opened on Jun 24, 2025

Incorrect allele ordering in plink

Status: Open.

#1315 In sgkit-dev/sgkit;

· jeromekelleher opened on May 20, 2025

read_plink returns 'nan' strings for sample_ids

bugSomething isn't workingSomething isn't working

Status: Open.

#1314 In sgkit-dev/sgkit;

· jeromekelleher opened on May 20, 2025

Support lazy <code>save_dataset</code> ?

Status: Open.

#1298 In sgkit-dev/sgkit;

· rajwanir opened on Mar 31, 2025

The best way to append samples to a dataset?

Status: Open.

#1295 In sgkit-dev/sgkit;

· rajwanir opened on Mar 26, 2025

Citation

Status: Open.

#1293 In sgkit-dev/sgkit;

· fouerghi opened on Mar 12, 2025

Add separate function for Watterson's theta

Status: Open.

#1279 In sgkit-dev/sgkit;

· percyfal opened on Dec 5, 2024