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Move from pyranges to ruranges #241

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tomwhite
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@tomwhite tomwhite commented Jul 1, 2025

Fixes #111

It was actually fairly straightforward to switch to ruranges - all the tests pass locally. However, ruranges has a minimum Python version of 3.12, so we can't merge this yet.

Also, we can't remove the pandas dependency (one of the motivations for #111) since we use it for plink.

@jeromekelleher
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However, ruranges has a minimum Python version of 3.12, so we can't merge this yet.

Oh dear. Hopefully there's no strong reason for this and support for older python versions can be added

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Replace PyRanges with NCLS to avoid pandas dependency
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