unikmer v0.7.0

Changes

• v0.7.0
  • new command unikmer filter: filter low-complexity k-mers.
  • new command unikmer split: split k-mers into sorted chunk files.
  • new command unikmer merge: merge from sorted chunk files.
  • unikmer view:
    • new option -N/--show-code-only for only showing encoded integers.
    • fix output error for -q/--fastq.
  • unikmer uniqs:
    • new option -x/--max-cont-non-uniq-kmers for limiting max continuous non-unique k-mers.
    • new option -X/--max-num-cont-non-uniq-kmers for limiting max number of continuous non-unique k-mers.
    • fix bug for -m/--min-len.
  • unikmer union:
    • new option -d/--repeated for only printing duplicate k-mers.
  • unikmer sort:
    • new option -u/--unique for removing duplicated k-mers.
    • new option -d/--repeated for only printing duplicate k-mers.
    • new option -m/--chunk-size for limiting maximum memory for sorting.
  • unikmer diff:
    • small speed improvements.