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Broad Institute
- Cambridge, MA
- @shantanu-singh.cc
Pinned Loading
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cellpainting-gallery
cellpainting-gallery PublicForked from broadinstitute/cellpainting-gallery
Cell Painting Gallery
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datasets
datasets PublicForked from jump-cellpainting/datasets
Images and other data from the JUMP Cell Painting Consortium
Jupyter Notebook
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jump-profiling-recipe
jump-profiling-recipe PublicForked from broadinstitute/jump-profiling-recipe
Workflow for processing cpg0016-jump profiles
Python
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carpenter-singh-lab/2024_Arevalo_NeurIPS_MotiVE
carpenter-singh-lab/2024_Arevalo_NeurIPS_MotiVE Public -
jump-cellpainting/2024_Chandrasekaran_Morphmap
jump-cellpainting/2024_Chandrasekaran_Morphmap Public -
cytomining/copairs
cytomining/copairs PublicFind profile pairs and compute metrics between them.
2,078 contributions in the last year
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Activity overview
Contribution activity
July 2025
Created 9 commits in 4 repositories
Created 1 repository
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shntnu/copairs
Python
This contribution was made on Jul 2
Created a pull request in cytomining/copairs that received 5 comments
feat: add generic copairs runner for flexible analysis configurations
Summary
Adds a generic copairs runner (utils/copairs_runner.py
) that enables flexible analysis through YAML/JSON configuration
Includes example co…
Opened 3 other pull requests in 3 repositories
cytomining/copairs
1
open
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Add MkDocs documentation with integrated examples
This contribution was made on Jul 3
broadinstitute/jump_hub
1
merged
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Add guide for creating project-specific profile manifests
This contribution was made on Jul 2
jump-cellpainting/datasets
1
merged
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fix: jq quotes + avoid xargs (args too long) to make script portable
This contribution was made on Jul 1
Reviewed 2 pull requests in 2 repositories
broadinstitute/monorepo
1 pull request
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Update JUMP links to match new structure and location
This contribution was made on Jul 2
broadinstitute/jump-profiling-recipe
1 pull request
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Adding Deep Learning profile handeling
This contribution was made on Jul 1
Created an issue in broadinstitute/monorepo that received 5 comments
Update JUMP profile URLs to new structure
This repository may contain references to JUMP profile data that need to be updated to reflect the new directory structure. Context The JUMP Cell P…
Opened 8 other issues in 8 repositories
jump-cellpainting/datasets
1
open
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Delete cpg0016-jump-assembled/source_all/workspace/profiles/
This contribution was made on Jul 3
diyasrivas/JUMP-MicroSplit
1
open
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Update JUMP profile URLs to new structure
This contribution was made on Jul 3
yashaektefaie/Tahoe_Hackathon
1
open
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Update JUMP profile URLs to new structure
This contribution was made on Jul 3
liugangcode/MolBench_tool
1
open
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Update JUMP profile URLs to new structure
This contribution was made on Jul 3
jump-cellpainting/2024_Chandrasekaran_Morphmap
1
open
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Update JUMP profile URLs to new structure
This contribution was made on Jul 3
HugoHakem/jump_attribution
1
open
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Update JUMP profile URLs to new structure
This contribution was made on Jul 3
broadinstitute/jump_hub
1
closed
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Update JUMP profile URLs to new structure
This contribution was made on Jul 3
upstash/context7
1
open
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Documentation Request: Clarify limitations of code examples
This contribution was made on Jul 2