CI: Updated configuration to use github actions and cibuildwheel; ZFP: Fixed compilation options for Visual Studio 2022

.github/workflows/ci.yml

@@ -1,86 +1,62 @@
-# This is a basic workflow to help you get started with Actions
-
 name: CI
 
-# Controls when the action will run.
 on:
-  # Triggers the workflow on push or pull request events but only for the main branch
   push:
     branches: [ main ]
   pull_request:
     branches: [ main ]
-
-  # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
-# A workflow run is made up of one or more jobs that can run sequentially or in parallel
 jobs:
-  # This workflow contains a single job called "build"
-  build:
-    name: "Python ${{ matrix.python-version }} on ${{ matrix.os }} ${{ matrix.name-suffix }}"
-    runs-on: ${{ matrix.os }}
-    strategy:
-      # do not cancel tests after first fail
-      fail-fast: false
-      matrix:
-        include:
-          - name-suffix: "wheel-h5py_3.0.0"
-            os: ubuntu-latest
-            python-version: '3.7'
-            OLDEST_DEPENDENCIES: 'h5py==3.0.0 "numpy<2"'
-
-          - name-suffix: "sdist-h5py_3.6.0"
-            os: ubuntu-latest
-            python-version: '3.10'
-            OLDEST_DEPENDENCIES: 'h5py==3.6.0 "numpy<2"'
-
-          - name-suffix: "wheel-h5py_3.10.0"
-            os: ubuntu-latest
-            python-version: '3.12'
-            OLDEST_DEPENDENCIES: 'h5py==3.10.0 "numpy<2"'
-
-          - name-suffix: "wheel-h5py_3.0.0"
-            os: macos-13
-            python-version: '3.7.16'
-            OLDEST_DEPENDENCIES: 'h5py==3.0.0 "numpy<2"'
-            env:
-              MACOSX_DEPLOYMENT_TARGET: 10.15
-
-          - name-suffix: "wheel-h5py_3.10.0"
-            os: macos-13
-            python-version: '3.10.8'
-            OLDEST_DEPENDENCIES: 'h5py==3.10.0 "numpy<2"'
-
+  build_sdist:
+    name: Build sdist & documentation
+    runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: '3.12'
           cache: 'pip'
-      - name: Install build tool
-        run: python -m pip install --upgrade pip build
-      - name: Build sdist and wheel
-        run: python -m build
-      - name: Install wheel
-        run: pip install --pre "$(ls dist/hdf5plugin-*.whl)[test]" --only-binary blosc2 || pip install --pre dist/hdf5plugin-*.whl
-      - name: Run the tests with latest h5py
-        run: python test/test.py
-      - name: Run the tests with oldest h5py
-        run: |
-          pip install ${{ matrix.OLDEST_DEPENDENCIES }}
-          python test/test.py
+      - run: python -m pip install --upgrade pip build twine
+      - run: python -m build --sdist
+      - run: python -m twine check dist/*
+      # Build documentation
+      - run: sudo apt-get install pandoc
+      - run: pip install "$(ls ./dist/hdf5plugin-*.tar.gz)[doc]"
+        env:
+          HDF5PLUGIN_STRIP: all  # Do not build the filters
+      - run: sphinx-build --fail-on-warning --keep-going -b html doc/ ./html
+
+  build_test:
+    name: ${{ matrix.cibw_build }} / ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-20.04
+            cibw_build: "cp38-manylinux_x86_64"
+          - os: windows-2019
+            cibw_build: "cp38-win_amd64"
+          - os: macos-12
+            cibw_build: "cp38-macosx_x86_64"
+          - os: ubuntu-latest
+            cibw_build: "cp310-manylinux_x86_64"
+          - os: windows-latest
+            cibw_build: "cp311-win_amd64"
+          - os: macos-latest
+            cibw_build: "cp312-macosx_arm64"
 
-  build_wheels_macos:
-    name: Build ARM64 wheels on macos-latest
-    runs-on: macos-latest
     steps:
       - uses: actions/checkout@v4
       - uses: pypa/[email protected]
         env:
-          CIBW_BUILD: cp311-macosx_*
-          CIBW_ARCHS_MACOS: arm64
-          HDF5PLUGIN_SSE2: False
-          HDF5PLUGIN_SSSE3: False
-          HDF5PLUGIN_AVX2: False
-          HDF5PLUGIN_AVX512: False
-          HDF5PLUGIN_NATIVE: False
+          MACOSX_DEPLOYMENT_TARGET: "10.13"
+          CIBW_BUILD_VERBOSITY: 1
+          CIBW_BUILD: ${{ matrix.cibw_build }}
+          CIBW_TEST_EXTRAS: "test"
+          # Test twice: with latest version and with numpy v1 and oldest supported h5py
+          CIBW_TEST_COMMAND: >
+            python {project}/test/test.py &&
+            pip install -r {project}/ci/oldest_h5py.txt &&
+            python {project}/test/test.py

ci/oldest_h5py.txt

@@ -0,0 +1,5 @@
+numpy < 2
+h5py == 3.10.0 ; python_version == '3.12'
+h5py == 3.8.0 ; python_version == '3.11'
+h5py == 3.6.0 ; python_version == '3.10'
+h5py == 3.0.0 ; python_version <= '3.9'

doc/information.rst

@@ -42,7 +42,7 @@ Presentations
 
   - :doc:`Presentation material <hdf5plugin_EuropeanHUG2023/presentation>`
     (:download:`Notebook <hdf5plugin_EuropeanHUG2023/presentation.ipynb>`),
-    `Video <https://youtu.be/IyS_NgAwXuU>`_
+    `Video EuHUG2023 <https://youtu.be/IyS_NgAwXuU>`_
   - Benchmark: :download:`script <hdf5plugin_EuropeanHUG2023/benchmark.py>`, :download:`display notebook <hdf5plugin_EuropeanHUG2023/benchmark.ipynb>`
   - :doc:`HDF5 compressed chunk direct read example <hdf5plugin_EuropeanHUG2023/hdf5_compressed_chunk_direct_read>`
     (:download:`Notebook <hdf5plugin_EuropeanHUG2023/hdf5_compressed_chunk_direct_read.ipynb>`)
@@ -52,14 +52,14 @@ Presentations
 
   - :doc:`Presentation material <hdf5plugin_EuropeanHUG2022>`
     (:download:`Notebook <hdf5plugin_EuropeanHUG2022.ipynb>`),
-    `Video <https://youtu.be/Titp1XRBh9k>`_
+    `Video EuHUG2022 <https://youtu.be/Titp1XRBh9k>`_
 
 
 * :doc:`Presentation <hdf5plugin_EuropeanHUG2021>` at the `European HDF Users Group (HUG) Summer 2021 <https://www.hdfgroup.org/hug/europeanhug21/>`_:
 
   - :doc:`Presentation material <hdf5plugin_EuropeanHUG2021>`
     (:download:`Notebook <hdf5plugin_EuropeanHUG2021.ipynb>`),
-    `Video <https://youtu.be/DP-r2omEnrg>`_
+    `Video EuHUG2021 <https://youtu.be/DP-r2omEnrg>`_
 
 
 HDF5 filters and compression libraries

pyproject.toml

@@ -44,8 +44,8 @@ doc = [
     "sphinx_rtd_theme",
 ]
 test = [
-    "blosc2>=2.5.1",
-    "blosc2-grok>=0.2.2",
+    "blosc2>=2.5.1;python_version>='3.9'",
+    "blosc2-grok>=0.2.2;python_version>='3.9'",
 ]
 
 [tool.setuptools]

setup.py

@@ -796,7 +796,9 @@ def get_sperr_clib(field=None):
 def get_zfp_clib(field=None):
     """ZFP static lib build config"""
     cflags = ['-O3', '-ffast-math', '-std=c99', '-fopenmp']
-    cflags += ['/Ox', '/fp:fast', '/openmp']
+    # Use /Ob1 to fix ZFP test failing with Visual Studio 2022: MSVC 14.40.33807
+    # See https://github.com/LLNL/zfp/issues/222
+    cflags += ['/Ob1', '/fp:fast', '/openmp']
 
     zfp_dir = "src/zfp"