v6.0.0

6.0.0 (2025-05-28)

⚠ BREAKING CHANGES

• fix handling of querysorted reads, replaced cutadapt by fastp, additional performance improvements and tool updates (#378)

Features

• fix handling of querysorted reads, replaced cutadapt by fastp, additional performance improvements and tool updates (#378) (4c28667)

v5.16.2

5.16.2 (2025-05-23)

Bug Fixes

• consider aux files as local (they are part of the config, which is always considered local) (#379) (4341b5e)

v5.16.1

5.16.1 (2025-05-21)

Performance Improvements

• improved WGS performance (#375) (3da4251)
• Update to datavzrd 2.57.0 (#376) (07243e3)

v5.16.0

5.16.0 (2025-03-26)

Features

• use semantic colors for heatmap in event probability columns (#371) (d966dc3)

v5.15.0

5.15.0 (2025-03-26)

Features

• annotate access patterns (#369) (6a95549)

Bug Fixes

• limit resources for kmer counting (#363) (2f5ef0d)

v5.14.0

5.14.0 (2025-03-06)

Features

• enable event reports (#364) (f6cfd4d)

v5.13.0

5.13.0 (2025-03-05)

Features

• allow retaining of artifacts (#367) (fb43f98)
• allow retaining of artifacts upon fdr control (#365) (7728382)

v5.12.1

5.12.1 (2025-02-21)

Bug Fixes

• avoid mis-parsing NA reference (REF) alleles in split-call-tables.py (#360) (9643ab9)

v5.12.0

5.12.0 (2025-02-19)

Features

• refactor pangenome mapping (#357) (412e361)

v5.11.1

5.11.1 (2025-02-07)

Bug Fixes

• generalize sorting for pangenome mapped reads (#353) (84b6aed)
• Update datavzrd wrapper (#358) (23bbd86)