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Issues list

Subsetting a XcmsExperiment object after alignment does not revert retention times of detected chrom peaks bug
#801 opened May 27, 2025 by jorainer
@jorainer
1
Deprecate xcmsFragments and remove in next devel cycle
#800 opened May 26, 2025 by sneumann
@sneumann
bug in chromPeakSpectra() when peaks = parameters has duplicated input
#796 opened May 15, 2025 by philouail
@jorainer @philouail
3
Unexpected results in subset-based alignment and alignment against reference
#795 opened May 14, 2025 by jorainer
@jorainer
3
mzClust C implementation unused
#791 opened Apr 7, 2025 by sneumann
add peak info in manualChromPeaks output
#788 opened Feb 12, 2025 by mar-garcia
Missing peak after grouping
#786 opened Jan 25, 2025 by plyush1993
15
multiple methods tables found for ‘filterFeatures’
#783 opened Dec 15, 2024 by sneumann
1
Parallel peakpicking and/or concatenating XcmsExperiment objects
#781 opened Nov 28, 2024 by pallevillesen
12
adjustRtime Errors
#777 opened Nov 6, 2024 by jzhou19
4
xcms on conda
#775 opened Oct 8, 2024 by cbroeckl
10
featureValues and featureDefinitions
#771 opened Sep 27, 2024 by yuan596
1
adjustRtime not conducted with large dataset, but working after register(SerialParam())
#766 opened Sep 10, 2024 by c-ze
6
Error in running the tutorial
#764 opened Sep 4, 2024 by Tina9
1
Is there any way to map the corresponding MS1 and its isotope information to the MS2 data extracted with spectrum?
#763 opened Aug 27, 2024 by GAOJianguo66
There's something wrong with maxo's calculations.
#759 opened Jul 31, 2024 by dongdongdong7
5
ppm paramenter for ChromPeakAreaParam
#756 opened Jun 27, 2024 by stanstrup
1
Regarding the steps of operating FillChromPeaksParam
#754 opened Jun 19, 2024 by v-v1150n
3
Add a function to coerce from XcmsExperiment to XCMSnExp enhancement
#752 opened Jun 3, 2024 by jorainer
@jorainer
fillChromPeaks: for MS2 chrom peaks: ensure data is integrated from spectra of the correct isolation window swath issues related to the SWATH support in xcms
#751 opened Jun 3, 2024 by jorainer
@jorainer
Duplicate values created by fillChromPeaks
#750 opened May 30, 2024 by frankyWk
1
Retention time alignment using a combination of LamaParama and subset-based alignment
#747 opened May 24, 2024 by CLUES-Emory
2
Visualize, use plotSpectraMirror function to draw spectrum matching results
#744 opened May 6, 2024 by v-v1150n
2
Support excluding samples for PeakDensity correspondence
#742 opened Apr 23, 2024 by jorainer
@jorainer
Best way to deconvolute metabolite data
#738 opened Apr 10, 2024 by JasonBason
1
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