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ColabFold fails to predict protein complex (invalid literal for int() with base 10: 'DUMMY' at MSA step)

Status: Open.

#734 In sokrypton/ColabFold;

· ks-2025 opened on Jul 5, 2025

Keeping included sequences constant in subsequent MSAs

Status: Open.

#733 In sokrypton/ColabFold;

· bschilder opened on Jul 3, 2025

terminate called after throwing an instance of 'std::logic_error'

Status: Open.

#732 In sokrypton/ColabFold;

· lyy-369 opened on Jul 3, 2025

Invalid database read for database data file

Status: Open.

#729 In sokrypton/ColabFold;

· lyy-369 opened on Jul 2, 2025

<code>colabfold_search</code> fails GPU search

Status: Open.

#728 In sokrypton/ColabFold;

· eyal-converge opened on Jul 1, 2025

colabfold_batch: error: unrecognized arguments: --af3-json

Status: Open.

#725 In sokrypton/ColabFold;

· heya5 opened on Jun 25, 2025

The same sequence keep pending

Status: Open.

#724 In sokrypton/ColabFold;

· dengshunhui opened on Jun 24, 2025

Running colabfold_search returns "terminate called recursively" and terminates

Status: Open.

#723 In sokrypton/ColabFold;

· eborobert opened on Jun 21, 2025

MMseqs2 API is giving errors

Status: Open.

#721 In sokrypton/ColabFold;

· YoavShamir5 opened on Jun 20, 2025

colabfold_search

Status: Open.

#720 In sokrypton/ColabFold;

· dhiraj82 opened on Jun 16, 2025

A possible bug in search.py

Status: Open.

#719 In sokrypton/ColabFold;

· goranrakocevic opened on Jun 16, 2025

colabfold_search without an index and --db-load-mode

Status: Open.

#718 In sokrypton/ColabFold;

· goranrakocevic opened on Jun 13, 2025