Rename CSF segmentations in derivatives (#154)

* rename CSF segmentations * add code to fix csf orientation and pixdim to correspond with image native space * reorient and resample to native resolution * Revert "reorient and resample to native resolution" This reverts commit f7f3db5. * Revert "add code to fix csf orientation and pixdim to correspond with image native space" This reverts commit 79e7157. --------- Co-authored-by: Mathieu Guay-Paquet <[email protected]>
spine-generic · Feb 21, 2024 · 5398c0f · 5398c0f
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diff --git a/...at/sub-barcelona05_T2w_csfseg-manual.json → ...at/sub-barcelona05_T2w_label-CSF_seg.json b/...at/sub-barcelona05_T2w_csfseg-manual.json → ...at/sub-barcelona05_T2w_label-CSF_seg.json
diff --git a/.../sub-barcelona05_T2w_csfseg-manual.nii.gz → .../sub-barcelona05_T2w_label-CSF_seg.nii.gz b/.../sub-barcelona05_T2w_csfseg-manual.nii.gz → .../sub-barcelona05_T2w_label-CSF_seg.nii.gz
diff --git a/...3/anat/sub-cmrrb03_T2w_csfseg-manual.json → ...3/anat/sub-cmrrb03_T2w_label-CSF_seg.json b/...3/anat/sub-cmrrb03_T2w_csfseg-manual.json → ...3/anat/sub-cmrrb03_T2w_label-CSF_seg.json
diff --git a/...anat/sub-cmrrb03_T2w_csfseg-manual.nii.gz → ...anat/sub-cmrrb03_T2w_label-CSF_seg.nii.gz b/...anat/sub-cmrrb03_T2w_csfseg-manual.nii.gz → ...anat/sub-cmrrb03_T2w_label-CSF_seg.nii.gz
diff --git a/.../anat/sub-geneva04_T2w_csfseg-manual.json → .../anat/sub-geneva04_T2w_label-CSF_seg.json b/.../anat/sub-geneva04_T2w_csfseg-manual.json → .../anat/sub-geneva04_T2w_label-CSF_seg.json
diff --git a/...nat/sub-geneva04_T2w_csfseg-manual.nii.gz → ...nat/sub-geneva04_T2w_label-CSF_seg.nii.gz b/...nat/sub-geneva04_T2w_csfseg-manual.nii.gz → ...nat/sub-geneva04_T2w_label-CSF_seg.nii.gz
diff --git a/...anat/sub-nottwil01_T2w_csfseg-manual.json → ...anat/sub-nottwil01_T2w_label-CSF_seg.json b/...anat/sub-nottwil01_T2w_csfseg-manual.json → ...anat/sub-nottwil01_T2w_label-CSF_seg.json
diff --git a/...at/sub-nottwil01_T2w_csfseg-manual.nii.gz → ...at/sub-nottwil01_T2w_label-CSF_seg.nii.gz b/...at/sub-nottwil01_T2w_csfseg-manual.nii.gz → ...at/sub-nottwil01_T2w_label-CSF_seg.nii.gz
diff --git a/...anat/sub-nottwil03_T2w_csfseg-manual.json → ...anat/sub-nottwil03_T2w_label-CSF_seg.json b/...anat/sub-nottwil03_T2w_csfseg-manual.json → ...anat/sub-nottwil03_T2w_label-CSF_seg.json
diff --git a/...at/sub-nottwil03_T2w_csfseg-manual.nii.gz → ...at/sub-nottwil03_T2w_label-CSF_seg.nii.gz b/...at/sub-nottwil03_T2w_csfseg-manual.nii.gz → ...at/sub-nottwil03_T2w_label-CSF_seg.nii.gz
diff --git a/...anat/sub-nottwil04_T2w_csfseg-manual.json → ...anat/sub-nottwil04_T2w_label-CSF_seg.json b/...anat/sub-nottwil04_T2w_csfseg-manual.json → ...anat/sub-nottwil04_T2w_label-CSF_seg.json
diff --git a/...at/sub-nottwil04_T2w_csfseg-manual.nii.gz → ...at/sub-nottwil04_T2w_label-CSF_seg.nii.gz b/...at/sub-nottwil04_T2w_csfseg-manual.nii.gz → ...at/sub-nottwil04_T2w_label-CSF_seg.nii.gz
diff --git a/...4/anat/sub-pavia04_T2w_csfseg-manual.json → ...4/anat/sub-pavia04_T2w_label-CSF_seg.json b/...4/anat/sub-pavia04_T2w_csfseg-manual.json → ...4/anat/sub-pavia04_T2w_label-CSF_seg.json
diff --git a/...anat/sub-pavia04_T2w_csfseg-manual.nii.gz → ...anat/sub-pavia04_T2w_label-CSF_seg.nii.gz b/...anat/sub-pavia04_T2w_csfseg-manual.nii.gz → ...anat/sub-pavia04_T2w_label-CSF_seg.nii.gz
diff --git a/...anat/sub-perform02_T2w_csfseg-manual.json → ...anat/sub-perform02_T2w_label-CSF_seg.json b/...anat/sub-perform02_T2w_csfseg-manual.json → ...anat/sub-perform02_T2w_label-CSF_seg.json
diff --git a/...at/sub-perform02_T2w_csfseg-manual.nii.gz → ...at/sub-perform02_T2w_label-CSF_seg.nii.gz b/...at/sub-perform02_T2w_csfseg-manual.nii.gz → ...at/sub-perform02_T2w_label-CSF_seg.nii.gz
diff --git a/...sub-tokyoIngenia05_T2w_csfseg-manual.json → ...sub-tokyoIngenia05_T2w_label-CSF_seg.json b/...sub-tokyoIngenia05_T2w_csfseg-manual.json → ...sub-tokyoIngenia05_T2w_label-CSF_seg.json
diff --git a/...b-tokyoIngenia05_T2w_csfseg-manual.nii.gz → ...b-tokyoIngenia05_T2w_label-CSF_seg.nii.gz b/...b-tokyoIngenia05_T2w_csfseg-manual.nii.gz → ...b-tokyoIngenia05_T2w_label-CSF_seg.nii.gz
diff --git a/...sub-tokyoIngenia06_T2w_csfseg-manual.json → ...sub-tokyoIngenia06_T2w_label-CSF_seg.json b/...sub-tokyoIngenia06_T2w_csfseg-manual.json → ...sub-tokyoIngenia06_T2w_label-CSF_seg.json
diff --git a/...b-tokyoIngenia06_T2w_csfseg-manual.nii.gz → ...b-tokyoIngenia06_T2w_label-CSF_seg.nii.gz b/...b-tokyoIngenia06_T2w_csfseg-manual.nii.gz → ...b-tokyoIngenia06_T2w_label-CSF_seg.nii.gz