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Add T2w dorsal rootlets labels #158

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Add T2w dorsal rootlets labels #158

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74b67aa
Add rootlets ground truth labels for 21 images. These 21 images were …
valosekj Feb 13, 2024
50e011c
Add rootlets ground truth labels for 3 images. These labels come from…
valosekj Feb 13, 2024
cb54bc7
Do NOT use 'desc-rater' at the filenames end
valosekj Mar 25, 2024
32fd30b
Merge branch 'master' into jv/add_rootlets_labels
mguaypaq Mar 28, 2024
ed16263
Do NOT use 'desc-staple' at the filenames end
valosekj Apr 3, 2024
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11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu01/anat/sub-amu01_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30820--459e971184aca2428a0033da391340996307e23a423c6a69dda4c6c95328daaf.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Theo Mathieu",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater1_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s231587--703bb31bbda6fac63f90a68ca79fef013df708ef2ef13e2ac7545dbee4f08c6b.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Raphaëlle Schlienger",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater2_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s52750--01e484b62bc7bc5f3a9927b5eaf9cb57f7855beb814f0f5c740cec50440ac386.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valošek",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater3_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s231033--b8ac5ca846227008a5ed2f576bc37526552da982201a435c261009abb1b5748a.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Olivia Kowalczyk",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_desc-rater4_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s232263--5342e0d69dd0894c9a66334e3b83519a978beee422906b89e31211135727ccbc.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-rootlets_dseg_desc-staple.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "STAPLE",
"Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-rootlets_dseg_desc-staple.nii.gz
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/annex/objects/SHA256E-s7576--04f1f68df8013befa96d9734828889119bfadf472c0aeb9be369789dcb336ef5.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30419--749abd3e708f724d8becee4ebcc384380b094b763dd5a55a17a42a3dc9fef033.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31140--753ef2fa5759ee1ba154952cc604009ba6bbff447946bc491437f41fd1d1f795.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31130--9849b357560385cd3d3903c4c682646bf8c07cc3cc01540d15318d432e017181.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30599--2c73e0212dfb7edd96d4b228c3db38818cd666e72ad40801c7402a6aca627a33.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31457--f6c707cc51182039425389fe55762d5171278c83ac1dfeb0908d22b1af8b9c64.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30706--6c0364c210d63a076c2af19fa4a3faa4a84832006ce7baaefc7c67b60eea4684.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Theo Mathieu",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater1_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s233873--17162e121e0b9b2c0d6bff7032dbb114b3998095c29e0f441c265de4a510a86e.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Raphaëlle Schlienger",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater2_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s53626--2903800749fb705f13e673bd49f30e281641ec8b3e9085a1801334228c1a29b7.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valošek",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater3_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s233878--4d22dace4aa4822890fa4fa80e0bc23b8b56a7bf1f58d8adcacf19ee7fe32e21.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Olivia Kowalczyk",
"Description": "Manually created label of dorsal rootlets C2-C8 used to assess the inter-rater variability and test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_desc-rater4_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s234990--e0fca05481d550bbb11b2f31aa786ba1f5f67850394214e3b44d1d000809af62.nii.gz
11 changes: 11 additions & 0 deletions ...ives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_label-rootlets_dseg_desc-staple.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "STAPLE",
"Description": "Reference ground truth label (created using the STAPLE algorithm) of dorsal rootlets C2-C8 used to test the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/issues/17 and https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions ...es/labels/sub-barcelona01/anat/sub-barcelona01_T2w_label-rootlets_dseg_desc-staple.nii.gz
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/annex/objects/SHA256E-s8578--d81921c9fda67565f58d9218b0f93205f5b43e710e1605e3a6fb76c40284a726.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s30916--ab5650ca16ed5a7ec2e41e6643094fda9667883084418843748043b14ea04a23.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31515--8a488a5acfea01f9aa836905cfe8764044aa36e552a17cf0d7a4b43bd9b4af57.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s31317--e0e6378e4803ae1738037e26b7a58e229fa533c28727f5567b261f00eb67f15c.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Jan Valosek, Theo Mathieu",
"Description": "Manually corrected ground truth labels of dorsal rootlets C2-C8 used to train the model M5; details: https://github.com/ivadomed/model-spinal-rootlets/pull/23#issuecomment-1836305457",
"Date": "2023-12-01"
}
]
}
1 change: 1 addition & 0 deletions derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-rootlets_dseg.nii.gz
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/annex/objects/SHA256E-s70265--400a207a5ccb1ec06d4e0f0528062019f231c5eec1cecded9511a0fc92e18e5a.nii.gz
11 changes: 11 additions & 0 deletions derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater1_label-rootlets_dseg.json
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{
"SpatialReference": "orig",
"GeneratedBy": [
{
"Name": "Manual",
"Author": "Theo Mathieu",
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1 change: 1 addition & 0 deletions ...atives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_desc-rater2_label-rootlets_dseg.nii.gz
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