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update README
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stevekm committed Jul 25, 2022
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Expand Up @@ -10,6 +10,8 @@ git clone https://github.com/stevekm/reference-annotations.git
cd reference-annotations
```

(if you do not have BEDOPS installed and in your PATH you can also run the `make bin` recipe to download it in the current dir)

Generate the desired annotation files from the available entries:

- `all`, `gencode-hg19`, `gencode-hg38`, `gencode-hg38v41`, `ensembl-hg19`, `ensembl-hg38`, `ensembl-mm10`
Expand Down Expand Up @@ -62,7 +64,7 @@ Intermediate files are removed by default. If you want to keep them, then commen

- `bash` shell

- [BEDOPS](http://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/gtf2bed.html)
- [BEDOPS](http://bedops.readthedocs.io/en/latest/content/reference/file-management/conversion/gtf2bed.html)

# Resources

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