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1. FischbachLab/nf-amr FischbachLab/nf-amr Public

   Run basic AMRFinderPlus on a set of genomes

   Nextflow

2. FischbachLab/nf-reads-profiler FischbachLab/nf-reads-profiler Public

   Nextflow pipeline to run Metaphlan3 and Humann3 on QC-ed reads.

   Nextflow 4 1

3. FischbachLab/nf-bakta FischbachLab/nf-bakta Public

   Use Bakta for speedy and consistent genome annotation

   Python

4. FischbachLab/ninjaMap FischbachLab/ninjaMap Public

   Compute strain abundance in a defined microbial community

   Python 9 2

5. tetramerFreqs/Binning tetramerFreqs/Binning Public

   Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmons, B.C. Thomas, A.P. Yelton, and J.F. Banfield (2009). Comm…

   Perl 17 12

6. LiteratureReviewBot LiteratureReviewBot Public

   Create a bot that scans pubmed literature and github for publications related to a topic and summarizes them in a table.

   Python