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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 462 101

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 16 10

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 17 1

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 11

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 7 1

Repositories

Showing 10 of 54 repositories
  • lablink Public
    talmolab/lablink’s past year of commit activity
    Shell 0 BSD-2-Clause 0 23 1 Updated Mar 22, 2025
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 6 GPL-3.0 0 15 3 Updated Mar 22, 2025
  • dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    talmolab/dreem’s past year of commit activity
    Python 7 BSD-3-Clause 1 8 8 Updated Mar 22, 2025
  • vnl-ray Public Forked from TuragaLab/flybody

    MuJoCo fruit fly body model and reinforcement learning tasks

    talmolab/vnl-ray’s past year of commit activity
    Python 4 Apache-2.0 11 0 0 Updated Mar 21, 2025
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 462 101 67 (4 issues need help) 30 Updated Mar 20, 2025
  • sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    talmolab/sleap-roots’s past year of commit activity
    Python 11 BSD-3-Clause 0 9 0 Updated Mar 20, 2025
  • webRTC-connect Public
    talmolab/webRTC-connect’s past year of commit activity
    Python 0 MIT 0 1 2 Updated Mar 20, 2025
  • sleap-roots-pipeline Public

    Container orchestration for sleap-roots inference pipeline.

    talmolab/sleap-roots-pipeline’s past year of commit activity
    0 BSD-2-Clause 0 0 1 Updated Mar 20, 2025
  • stac-mjx Public

    Implementation of STAC using MJX for GPU acceleration. Part of VNL project.

    talmolab/stac-mjx’s past year of commit activity
    Jupyter Notebook 8 BSD-3-Clause 2 35 1 Updated Mar 12, 2025
  • mujoco_playground Public Forked from google-deepmind/mujoco_playground

    An open-source library for GPU-accelerated robot learning and sim-to-real transfer.

    talmolab/mujoco_playground’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 92 0 0 Updated Mar 12, 2025
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