Find and visualize rearrangements in DNA sequences

♥ Efficient Estimation of Evolutionary Distances

Fast and accurate tool for estimating genomic distances between genome-skims

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

♥ Fast and Accurate Estimation of Evolutionary Distances

Alignment-Free RGBT Salient Object Detection: Semantics-guided Asymmetric Correlation Network and A Unified Benchmark

A tool to infer metagenomic sample composition

Mapping-free software for fishing relevant reads in an RNA-Seq sample

Deep learning based alignment-free method for protein family modeling and prediction

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

AlfaPang builds pangenome graphs without alignments or references.

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

Alignment-Free RGB-T Salient Object Detection: A Large-scale Dataset and Progressive Correlation Network

Extract SNPs and accessory differences in closely related bacterial genomes from k-mers

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data

genotyping by Mapping-free ALternate-allele detection of known VAriants

A tool for compression and analysis of DNA sequences

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

Alignment-free phylogenomic splits

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