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TrackMate

TrackMate is your buddy for everyday tracking.

16 followers
https://imagej.net/plugins/trackmate

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README.md

TrackMate is your buddy for your everyday tracking.

This organization is an architectural layer housing TrackMate and its extensions.
The primary repository is trackmate-sc/TrackMate.
TrackMate is designed for use as a plugin for Fiji.
See also the TrackMate section of the ImageJ wiki.

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TrackMate TrackMate Public

TrackMate is your buddy for your everyday tracking.

Java 219 84
TrackMate-examples TrackMate-examples Public

A simple repository that shows how to extend TrackMate with your own modules.

Java 2 9

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Showing 10 of 24 repositories

TrackMate Public
TrackMate is your buddy for your everyday tracking.

trackmate-sc/TrackMate’s past year of commit activity

Java 219 GPL-3.0 84 20 7 Updated Nov 1, 2025
TrackMate-CTCRunner Public
Batch measurements of the Cell-Tracking-Challenge metrics using TrackMate.

trackmate-sc/TrackMate-CTCRunner’s past year of commit activity

Java 2 AGPL-3.0 1 2 0 Updated Nov 1, 2025
TrackMate-Spotiflow Public
Spotiflow integration in TrackMate.

trackmate-sc/TrackMate-Spotiflow’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Oct 14, 2025
TrackMate-Cellpose Public
Tentative Cellpose integration in TrackMate.

trackmate-sc/TrackMate-Cellpose’s past year of commit activity

Java 7 AGPL-3.0 5 3 1 Updated Sep 15, 2025
MaMuT Public
The fiji plugin for Massive Annotation

trackmate-sc/MaMuT’s past year of commit activity

Java 6 GPL-3.0 6 1 1 Updated Aug 18, 2025
TrackMate-InTRACKtive Public
TrackMate integration of the inTRACKtive track visualizer by the Royer lab.

trackmate-sc/TrackMate-InTRACKtive’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 30, 2025
TrackMate-Geff Public
Input / output of TrackMate files to GEFF

trackmate-sc/TrackMate-Geff’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 30, 2025
TrackMate-Trackastra Public
Trackastra integration as a tracker module in TrackMate.

trackmate-sc/TrackMate-Trackastra’s past year of commit activity

Java 2 GPL-3.0 0 0 0 Updated Jul 19, 2025
TrackMate-YOLO Public
YOLO integration as a detector in TrackMate.

trackmate-sc/TrackMate-YOLO’s past year of commit activity

Java 0 GPL-3.0 0 0 0 Updated Jul 19, 2025
TrackMate-StarDist Public
StarDist detection as TrackMate detectors.

trackmate-sc/TrackMate-StarDist’s past year of commit activity

Java 7 GPL-3.0 2 3 0 Updated Jul 18, 2025

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