Error when saving manual edits from TrackScheme #329
Description
Hello,
TrackMate is great and I have been using it to correct spots created in another program (Ultrack, a Napari plugin). It is mostly going smoothly, however, sometimes when I make some edits or when I try to save, I get the following error. If you could please advise on where I might be going wrong, I would greatly appreciate it. Thank you!
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: no such vertex in graph: 169000005
at org.jgrapht.graph.AbstractGraph.assertVertexExist(AbstractGraph.java:131)
at org.jgrapht.graph.AbstractBaseGraph.edgesOf(AbstractBaseGraph.java:399)
at org.jgrapht.graph.GraphDelegator.edgesOf(GraphDelegator.java:233)
at org.jgrapht.Graphs.neighborListOf(Graphs.java:275)
at fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex.getPredecessors(TimeDirectedNeighborIndex.java:213)
at fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex.predecessorsOf(TimeDirectedNeighborIndex.java:81)
at fiji.plugin.trackmate.graph.GraphUtils.cumulativeBranchWidth(GraphUtils.java:328)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphLayout.execute(TrackSchemeGraphLayout.java:128)
at fiji.plugin.trackmate.visualization.trackscheme.TrackScheme.doTrackLayout(TrackScheme.java:1133)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeToolbar$6.actionPerformed(TrackSchemeToolbar.java:173)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: no such vertex in graph: 169000005
at org.jgrapht.graph.AbstractGraph.assertVertexExist(AbstractGraph.java:131)
at org.jgrapht.graph.AbstractBaseGraph.edgesOf(AbstractBaseGraph.java:399)
at org.jgrapht.graph.GraphDelegator.edgesOf(GraphDelegator.java:233)
at org.jgrapht.Graphs.neighborListOf(Graphs.java:275)
at fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex.getPredecessors(TimeDirectedNeighborIndex.java:213)
at fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex.predecessorsOf(TimeDirectedNeighborIndex.java:81)
at fiji.plugin.trackmate.graph.GraphUtils.cumulativeBranchWidth(GraphUtils.java:328)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphLayout.execute(TrackSchemeGraphLayout.java:128)
at fiji.plugin.trackmate.visualization.trackscheme.TrackScheme.doTrackLayout(TrackScheme.java:1133)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeToolbar$6.actionPerformed(TrackSchemeToolbar.java:173)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.IllegalArgumentException: no such vertex in graph: 169000005
at org.jgrapht.graph.AbstractGraph.assertVertexExist(AbstractGraph.java:131)
at org.jgrapht.graph.AbstractBaseGraph.edgesOf(AbstractBaseGraph.java:399)
at org.jgrapht.graph.GraphDelegator.edgesOf(GraphDelegator.java:233)
at org.jgrapht.Graphs.neighborListOf(Graphs.java:275)
at fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex.getPredecessors(TimeDirectedNeighborIndex.java:213)
at fiji.plugin.trackmate.graph.TimeDirectedNeighborIndex.predecessorsOf(TimeDirectedNeighborIndex.java:81)
at fiji.plugin.trackmate.graph.GraphUtils.cumulativeBranchWidth(GraphUtils.java:328)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphLayout.execute(TrackSchemeGraphLayout.java:128)
at fiji.plugin.trackmate.visualization.trackscheme.TrackScheme.doTrackLayout(TrackScheme.java:1133)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeToolbar$6.actionPerformed(TrackSchemeToolbar.java:173)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
javax.swing.text.BadLocationException: Invalid remove
at java.desktop/javax.swing.text.AbstractDocument.handleRemove(AbstractDocument.java:635)
at java.desktop/javax.swing.text.AbstractDocument.remove(AbstractDocument.java:620)
at fiji.plugin.trackmate.gui.components.LogPanel$LogPanelLogger$1.run(LogPanel.java:167)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:318)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:773)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
javax.swing.text.BadLocationException: Invalid remove
at java.desktop/javax.swing.text.AbstractDocument.handleRemove(AbstractDocument.java:635)
at java.desktop/javax.swing.text.AbstractDocument.remove(AbstractDocument.java:620)
at fiji.plugin.trackmate.gui.components.LogPanel$LogPanelLogger$1.run(LogPanel.java:167)
at java.desktop/java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:318)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:773)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException: Cannot invoke "fiji.plugin.trackmate.tracking.SpotTrackerFactory.getKey()" because "trackerFactory" is null
at fiji.plugin.trackmate.gui.wizard.TrackMateWizardSequence.getTrackerConfigDescriptor(TrackMateWizardSequence.java:381)
at fiji.plugin.trackmate.gui.wizard.TrackMateWizardSequence.previous(TrackMateWizardSequence.java:183)
at fiji.plugin.trackmate.gui.wizard.WizardController.previous(WizardController.java:128)
at fiji.plugin.trackmate.gui.wizard.WizardController$2.actionPerformed(WizardController.java:299)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException: Cannot invoke "fiji.plugin.trackmate.tracking.SpotTrackerFactory.getKey()" because "trackerFactory" is null
at fiji.plugin.trackmate.gui.wizard.TrackMateWizardSequence.getTrackerConfigDescriptor(TrackMateWizardSequence.java:381)
at fiji.plugin.trackmate.gui.wizard.TrackMateWizardSequence.previous(TrackMateWizardSequence.java:183)
at fiji.plugin.trackmate.gui.wizard.WizardController.previous(WizardController.java:128)
at fiji.plugin.trackmate.gui.wizard.WizardController$2.actionPerformed(WizardController.java:299)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException: Index 0 out of bounds for length 0
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException: Index 0 out of bounds for length 0
at fiji.plugin.trackmate.features.track.TrackSpeedStatisticsAnalyzer.analyze(TrackSpeedStatisticsAnalyzer.java:113)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer$1.call(AbstractTrackAnalyzer.java:194)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer$1.call(AbstractTrackAnalyzer.java:189)
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1144)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:642)
... 1 more
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at org.jgrapht.graph.AbstractGraph.assertVertexExist(AbstractGraph.java:129)
at org.jgrapht.graph.AbstractBaseGraph.addEdge(AbstractBaseGraph.java:215)
at fiji.plugin.trackmate.graph.ConvexBranchesDecomposition.buildBranchGraph(ConvexBranchesDecomposition.java:580)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeGraphLayout.execute(TrackSchemeGraphLayout.java:232)
at fiji.plugin.trackmate.visualization.trackscheme.TrackScheme.doTrackLayout(TrackScheme.java:1133)
at fiji.plugin.trackmate.visualization.trackscheme.TrackSchemeToolbar$6.actionPerformed(TrackSchemeToolbar.java:173)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1972)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2314)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:407)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:279)
at java.desktop/java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:297)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6621)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3398)
at java.desktop/java.awt.Component.processEvent(Component.java:6386)
at java.desktop/java.awt.Container.processEvent(Container.java:2266)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:4996)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2324)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4948)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4575)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4516)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2310)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2780)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4828)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:775)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:720)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:714)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:98)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:747)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.base/java.security.AccessController.doPrivileged(AccessController.java:400)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:87)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:744)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Exception in thread "TrackMate action thread" java.lang.NullPointerException: Cannot invoke "java.io.File.getParentFile()" because the return value of "java.io.File.getParentFile()" is null
at fiji.plugin.trackmate.action.ExportTracksToXML.execute(ExportTracksToXML.java:119)
at fiji.plugin.trackmate.gui.components.ActionChooserPanel$1.lambda$actionPerformed$0(ActionChooserPanel.java:97)
at java.base/java.lang.Thread.run(Thread.java:1583)
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
Exception in thread "TrackMate action thread" java.lang.NullPointerException: Cannot invoke "java.io.File.getParentFile()" because the return value of "java.io.File.getParentFile()" is null
at fiji.plugin.trackmate.action.ExportTracksToXML.execute(ExportTracksToXML.java:119)
at fiji.plugin.trackmate.gui.components.ActionChooserPanel$1.lambda$actionPerformed$0(ActionChooserPanel.java:97)
at java.base/java.lang.Thread.run(Thread.java:1583)
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException
java.util.concurrent.ExecutionException: java.lang.ArrayIndexOutOfBoundsException
at java.base/java.util.concurrent.FutureTask.report(FutureTask.java:122)
at java.base/java.util.concurrent.FutureTask.get(FutureTask.java:191)
at fiji.plugin.trackmate.features.track.AbstractTrackAnalyzer.process(AbstractTrackAnalyzer.java:207)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.computeTrackFeaturesAgent(TrackFeatureCalculator.java:156)
at fiji.plugin.trackmate.features.TrackFeatureCalculator.process(TrackFeatureCalculator.java:107)
at fiji.plugin.trackmate.TrackMate.computeTrackFeatures(TrackMate.java:243)
at fiji.plugin.trackmate.gui.wizard.descriptors.SaveDescriptor.displayingPanel(SaveDescriptor.java:76)
at fiji.plugin.trackmate.gui.wizard.WizardController.lambda$save$2(WizardController.java:238)
at java.base/java.lang.Thread.run(Thread.java:1583)
Caused by: java.lang.ArrayIndexOutOfBoundsException