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@treangenlab

Treangen Lab

Treangen Lab @ Rice University

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  1. emu emu Public

    Python 48 6

  2. methphaser methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    Python 46 1

  3. Olivar Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    Python 24 2

  4. lemur lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Python 24 1

  5. magnet magnet Public

    Jupyter Notebook 10

  6. radmicrobes radmicrobes Public

    2025 RAD microbes boot camp

    HTML 10

Repositories

Showing 10 of 15 repositories
  • Olivar Public

    Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens

    Python 24 GPL-3.0 2 10 0 Updated Mar 18, 2025
  • radmicrobes Public

    2025 RAD microbes boot camp

    HTML 10 MIT 0 0 0 Updated Mar 13, 2025
  • methphaser Public

    MethPhaser: methylation-based haplotype phasing of human genomes

    Python 46 MIT 1 10 1 Updated Mar 5, 2025
  • lemur Public

    Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets

    Python 24 MIT 1 2 0 Updated Mar 3, 2025
  • emu Public
    Python 48 MIT 6 3 2 Updated Feb 14, 2025
  • sampling-scheme-analysis Public
    Jupyter Notebook 2 0 0 0 Updated Feb 8, 2025
  • Mimic Public Forked from collaborativebioinformatics/Mimic

    Generates simulated ONT/PacBio metegenomic samples based off real microbiome sample abundances

    Python 1 MIT 1 0 0 Updated Dec 19, 2024
  • treangenlab.github.io Public

    Treangen lab website

    HTML 0 MIT 0 0 0 Updated Nov 18, 2024
  • InfA-amplicon Public

    Amplicon sequencing of influenza A

    2 GPL-3.0 0 0 0 Updated Sep 16, 2024
  • magnet Public
    Jupyter Notebook 10 0 4 0 Updated Aug 20, 2024
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