update misc

treangen · web-flow · commit 0eb52ed06cb4 · 2024-10-23T07:47:43.000-05:00
diff --git a/_bibliography/papers.bib b/_bibliography/papers.bib
@@ -1,3 +1,23 @@
+@article{wolken2024prek,
+  title={PreK-12 school and citywide wastewater monitoring of the enteric viruses astrovirus, rotavirus, and sapovirus},
+  author={Wolken, Madeline and Wang, Michael and Schedler, Julia and Campos Jr, Roberto H and Ensor, Katherine and Hopkins, Loren and Treangen, Todd and Stadler, Lauren B},
+  journal={Science of The Total Environment},
+  volume={931},
+  pages={172683},
+  year={2024},
+  publisher={Elsevier}
+}
+
+@article{wu2024rapid,
+  title={Rapid Genomic Characterization of High-Risk, Antibiotic Resistant Pathogens Using Long-Read Sequencing to Identify Nosocomial},
+  author={Wu, Chin-Ting and Spallone, Amy and Cantu, Sherry and Treangen, Todd and Shropshire, William and Bhatti, Micah and Glover, Israel and Liu, Xiaojun and Shelburne, Samuel and Kalia, Awdhesh},
+  journal={Antimicrobial Stewardship \& Healthcare Epidemiology},
+  volume={4},
+  number={S1},
+  pages={s106--s106},
+  year={2024},
+  publisher={Cambridge University Press}
+}
 @article{adenaiye2022infectious,
 	bibtex_show={true},
 	title        = {Infectious severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in exhaled aerosols and efficacy of masks during early mild infection},
@@ -1286,15 +1306,6 @@ @article{wu2024pan
 	volume       = 134,
 	number       = 2
 }
-@article{wu2024rapid,
-	bibtex_show={true},
-	title        = {Rapid Whole Genome Characterization of High-Risk Pathogens Using Long-Read Sequencing to Identify Potential Healthcare Transmission},
-	author       = {Wu, Chin-Ting and Shropshire, William C and Bhatti, Micah M and Cantu, Sherry and Glover, Israel K and Anand, Selvalakshmi Selvaraj and Liu, Xiaojun and Kalia, Awdhesh and Treangen, Todd and Chemaly, Roy F and others},
-	year         = 2024,
-	journal      = {medRxiv},
-	publisher    = {Cold Spring Harbor Laboratory Press},
-	pages        = {2024--08}
-}
 @article{zimin2014new,
 	bibtex_show={true},
 	title        = {A new rhesus macaque assembly and annotation for next-generation sequencing analyses},
diff --git a/_config.yml b/_config.yml
@@ -209,7 +209,7 @@ announcements:
 latest_posts:
   enabled: false
   scrollable: true # adds a vertical scroll bar if there are more than 3 new posts items
-  limit: 3 # leave blank to include all the blog posts
+  limit: 5 # leave blank to include all the blog posts
 
 # -----------------------------------------------------------------------------
 # Jekyll settings
diff --git a/_pages/about.md b/_pages/about.md
@@ -1,6 +1,6 @@
 ---
 layout: about
-title: lab
+title: about
 permalink: /
 subtitle: <a href='https://csweb.rice.edu'>Department of Computer Science, Rice University </a>. 
 
diff --git a/_pages/cv.md b/_pages/cv.md
@@ -1,10 +1,11 @@
 ---
 layout: cv
 permalink: /cv/
-title: cv
+title: Lab PI
 nav: true
 nav_order: 5
-description: CV of Treangen Lab PI (Todd J. Treangen)
+description: Treangen Lab PI (Dr. Todd J. Treangen)
 toc:
   sidebar: left
 ---
+Dr. Treangen formed the Treangen Lab in July 2018. Given the computational challenges presented by the metagenomic data deluge, coupled with the time-sensitive nature of problems specific to tracking pandemics and synthetic DNA screening, the Treangen lab strives to develop efficient and accurate computational solutions to emerging problems in these fields. Specifically, his research group focuses on the design, development, and implementation of novel algorithms, heuristics, and data structures to solve emerging computational research questions specific to biosecurity, infectious disease monitoring, and host-associated microbiome characterization. The Treangen lab is also dedicated to the dissemination and development of novel open-source bioinformatics methods, software, and pipelines, and to providing “hands on” research opportunities to Rice undergraduates.
diff --git a/_pages/repositories.md b/_pages/repositories.md
@@ -1,16 +1,14 @@
 ---
 layout: page
 permalink: /repositories/
-title: github
+title: Code
 description: Treangen lab Github repositories
 nav: true
 nav_order: 4
 ---
 
 {% if site.data.repositories.github_users %}
 
-## GitHub users
-
 {% if site.repo_trophies.enabled %}
 {% for user in site.data.repositories.github_users %}
 {% if site.data.repositories.github_users.size > 1 %}
diff --git a/_posts/2024-10-20-LAMG_conference.md b/_posts/2024-10-20-LAMG_conference.md
@@ -28,14 +28,14 @@ I am excited to share my experiences at the [Lake Arrowhead Microbial Genomes (L
 ---
 
 <div class="text-align: center;">
-  <img src="/assets/img/posterLAMG.jpeg" alt="Lemur/Magnet poster presentation" width="500" height="600">
+  <img src="/assets/img/posterLAMG.jpeg" alt="Lemur/Magnet poster presentation" height="600">
 </div>
 
 ### First Impressions
 The setting was stunning! We stayed in lakeside cabins with a serene, scenic view, and the perfect California weather made it easy to unwind, enjoy nature, and dive into productive networking and science.
 
 <div class="text-align: center;">
-  <img src="/assets/img/LakeArrowhead.jpeg" alt="Lake Arrowhead Conference Centre" width="500" height="600">
+  <img src="/assets/img/LakeArrowhead.jpeg" alt="Lake Arrowhead Conference Centre" height="600">
 </div>
 
 As a computational biology and bioinformatics student, it was exciting to be among a predominantly wet-lab audience, sharing insights and learning what biologists value in computational tools. I liked how there was a good mix of students and PIs and Biotech companies as well. This gave me the industry and academia interplay which I really like to see. The diverse talks were inspiring, and two stood out to me in particular.
