Skip to content

Commit 4bdf70e

Browse files
authored
Update 2024-09-28-stampsblog.md
add liquid
1 parent f75be91 commit 4bdf70e

File tree

1 file changed

+5
-9
lines changed

1 file changed

+5
-9
lines changed

_posts/2024-09-28-stampsblog.md

+5-9
Original file line numberDiff line numberDiff line change
@@ -6,6 +6,7 @@ tags: workshops
66
giscus_comments: false
77
date: 2024-09-28
88
featured: false
9+
thumbnail: assets/img/crabs_mbl.jpg
910

1011
authors:
1112
- name: Austin Marshall
@@ -34,16 +35,12 @@ Hey there, I'm Austin Marshall, a first year postdoctoral fellow in the [Villapo
3435
### Location
3536
The STAMPS workshop is held at the University of Chicago, Marine Biological Laboratory. The Marine Biological Laboratory (**MBL**) is located in [Wood's Hole, Massachusetts](https://www.google.com/maps/place/Woods+Hole,+Falmouth,+MA/@41.5300117,-70.6892765,14z/data=!3m1!4b1!4m6!3m5!1s0x89e4d87731d3bb2b:0x6057f1e3e2336b81!8m2!3d41.5264977!4d-70.6730857!16zL20vMHR5N2I?entry=ttu&g_ep=EgoyMDI0MDkyNS4wIKXMDSoASAFQAw%3D%3D) and is the closest mainland town to [Martha's Vineyard.](https://www.google.com/maps/place/Martha's+Vineyard/@41.3923525,-70.817379,11z/data=!3m1!4b1!4m14!1m7!3m6!1s0x89e525890034153b:0xf5d72dfce4b4bc43!2sMartha's+Vineyard!8m2!3d41.3804981!4d-70.645473!16zL20vMGd0cmc!3m5!1s0x89e525890034153b:0xf5d72dfce4b4bc43!8m2!3d41.3804981!4d-70.645473!16zL20vMGd0cmc?entry=ttu&g_ep=EgoyMDI0MDkyNS4wIKXMDSoASAFQAw%3D%3D)
3637

37-
<div class="text-align: center;">
38-
<img src="https://treangenlab.github.io/assets/img/crabs_mbl.jpg" alt="horseshoe crabs at MBL">
39-
</div>
38+
{% include figure.liquid loading="eager" path="assets/img/crabs_mbl.jpg" class="img-fluid rounded z-depth-1" %}
4039

4140
### History
4241
I was unaware of the immensely deep research history that the Woods Hole Oceanographic Institute and Marine Biology Laboratory have until I was tired of having my thinking cap on one evening and started looking around the amazing displays where I stumbled upon this.
4342

44-
<div class="text-align: center;">
45-
<img src="https://treangenlab.github.io/assets/img/thm_nobel.jpg" alt="Thomas Hunt Morgan Nobel Prize">
46-
</div>
43+
{% include figure.liquid loading="eager" path="assets/img/thm_nobel.jpg" class="img-fluid rounded z-depth-1" %}
4744

4845
Check out this awesome Nobel prize they have on display near the Lillie Library, it was awarded to Thomas Hunt Morgan for his discovery of the role chromosomes play in heredity. Countless nobel laureates, defining figures in biology, and just amazing researchers had walked through these same halls that I was fortunate enough to have the opportunity to as well. For a wild list of nobel laureates affiliated with the MBL check out [this page.](https://www.mbl.edu/about/history-archives/nobel-laureates)
4946

@@ -56,9 +53,8 @@ The speaker lineup for the STAMPS workshop is pretty insane. The lectures began
5653

5754
After Dr. Brown gave the basis of metagenomic asequencing and analysis it was time for my group to step up to the plate. My co-PI [Dr. Todd J. Treangen](https://scholar.google.com/citations?user=N5irv88AAAAJ&hl=en) and STAMPS alumni / research scientist in the Treangen Lab [Dr. Michael G. Nute](https://scholar.google.com/citations?hl=en&user=E1v2MBUAAAAJ) gave a very in-depth look into metagenomic assembly including a hands on demonstration of reference-based vs. de-novo assembly methods and also gave some insight into multiprocessing and how we as a class only ran our assembly on one core...
5855

59-
<div class="text-align: center;">
60-
<img src="https://treangenlab.github.io/assets/img/agm_assembler.jpg" alt="cinnamon bun powered genome assembler">
61-
</div>
56+
{% include figure.liquid loading="eager" path="assets/img/agm_assembler.jpg" class="img-fluid rounded z-depth-1" %}
57+
6258
Behind the scenes of the metagenomic assembly tutorial, shown above a cinnamon bun powered window size estimator.
6359

6460

0 commit comments

Comments
 (0)