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Copy file name to clipboardExpand all lines: _bibliography/papers.bib
+18-12Lines changed: 18 additions & 12 deletions
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@@ -11,7 +11,7 @@ @article{adenaiye2022infectious
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}
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@article{agustinho2024unveiling,
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bibtex_show = {true},
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google_scholar_id={BwyfMAYsbu0C},
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scholar_paper_id={BwyfMAYsbu0C},
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title = {Unveiling microbial diversity: harnessing long-read sequencing technology},
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author = {Agustinho, Daniel P and Fu, Yilei and Menon, Vipin K and Metcalf, Ginger A and Treangen, Todd J and Sedlazeck, Fritz J},
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year = 2024,
@@ -77,7 +77,7 @@ @article{balaji2022seqscreen
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bibtex_show={true},
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selected={true},
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altmetric={130006025},
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google_scholar_id={CHSYGLWDkRkC},
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scholar_paper_id={CHSYGLWDkRkC},
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title = {SeqScreen: accurate and sensitive functional screening of pathogenic sequences via ensemble learning},
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author = {Balaji, Advait and Kille, Bryce and Kappell, Anthony D and Godbold, Gene D and Diep, Madeline and Elworth, RA Leo and Qian, Zhiqin and Albin, Dreycey and Nasko, Daniel J and Shah, Nidhi and others},
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year = 2022,
@@ -168,7 +168,7 @@ @article{curry2021takes
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}
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@article{curry2022emu,
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bibtex_show={true},
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google_scholar_id={1sJd4Hv_s6UC},
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scholar_paper_id={1sJd4Hv_s6UC},
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selected={true},
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altmetric={130469175},
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title = {Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data},
@@ -437,7 +437,7 @@ @article{holcomb2024probiotic
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}
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@article{huang2023giab,
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bibtex_show={true},
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google_scholar_id={u5HHmVD_uO8C},
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scholar_paper_id={u5HHmVD_uO8C},
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title = {The GIAB genomic stratifications resource for human reference genomes},
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author = {Dwarshuis, Nathan and Kalra, Divya and McDaniel, Jennifer and Sanio, Philippe and Soriano, Jerez and Pilar A, Jadhav and Huang, Wenyu and Mondal, Rajarshi and Busby, Ben and Olson, Nathanael D and Sedlazeck, Fritz J and Wagner, Justin and Majidian, Sina and Zook, Justin M},
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year = 2023,
@@ -466,7 +466,8 @@ @article{kasthuri2017draft
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}
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@article{schwalen2018bioinformatic,
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bibtex_show={true},
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//google_scholar_id={TFP_iSt0sucC},
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scholar_user_id={EUtkB0sAAAAJ},
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scholar_paper_id={TFP_iSt0sucC},
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title={Bioinformatic expansion and discovery of thiopeptide antibiotics},
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author={Schwalen, Christopher J and Hudson, Graham A and Kille, Bryce and Mitchell, Douglas A},
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journal={Journal of the American Chemical Society},
title={Bioinformatic mapping of radical S-adenosylmethionine-dependent ribosomally synthesized and post-translationally modified peptides identifies new C{$\alpha$}, C{$\beta$}, and C{$\gamma$}-linked thioether-containing peptides},
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author={Hudson, Graham A and Burkhart, Brandon J and DiCaprio, Adam J and Schwalen, Christopher J and Kille, Bryce and Pogorelov, Taras V and Mitchell, Douglas A},
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journal={Journal of the American Chemical Society},
title = {Multiple genome alignment in the telomere-to-telomere assembly era},
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author = {Kille, Bryce and Balaji, Advait and Sedlazeck, Fritz J and Nute, Michael and Treangen, Todd J},
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year = 2022,
@@ -512,7 +516,8 @@ @article{kille2022multiple
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}
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@article{kille2023minmers,
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bibtex_show={true},
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//google_scholar_id={p2g8aNsByqUC},
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scholar_user_id={EUtkB0sAAAAJ},
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scholar_paper_id={p2g8aNsByqUC},
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title = {Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation},
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author = {Kille, Bryce and Garrison, Erik and Treangen, Todd J and Phillippy, Adam M},
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year = 2023,
@@ -524,7 +529,8 @@ @article{kille2023minmers
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}
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@article{kille2024parsnp,
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bibtex_show={true},
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google_scholar_id={K3LRdlH-MEoC},
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scholar_user_id={EUtkB0sAAAAJ},
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scholar_paper_id={K3LRdlH-MEoC},
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title = {Parsnp 2.0: scalable core-genome alignment for massive microbial datasets},
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author = {Kille, Bryce and Nute, Michael G and Huang, Victor and Kim, Eddie and Phillippy, Adam M and Treangen, Todd J},
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year = 2024,
@@ -871,7 +877,7 @@ @article{sapoval2022current
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bibtex_show={true},
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title = {Current progress and open challenges for applying deep learning across the biosciences},
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selected={true},
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google_scholar_id={1qzjygNMrQYC},
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scholar_paper_id={1qzjygNMrQYC},
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altmetric={125736934},
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author = {Sapoval, Nicolae and Aghazadeh, Amirali and Nute, Michael G and Antunes, Dinler A and Balaji, Advait and Baraniuk, Richard and Barberan, CJ and Dannenfelser, Ruth and Dun, Chen and Edrisi, Mohammadamin and others},
title = {Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet},
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author = {Sapoval, Nicolae and Liu, Yunxi and Curry, Kristen and Kille, Bryce and Huang, Wenyu and Kokroko, Natalie and Nute, Michael G and Tyshaieva, Alona and Dilthey, Alexander T and Molloy, Erin and others},
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