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Factor out distributed SMC logic #2303

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jeromekelleher
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@jeromekelleher jeromekelleher commented Aug 2, 2024

Bring SMC k logic together in one place as part of #2294

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codecov bot commented Aug 2, 2024

Codecov Report

Attention: Patch coverage is 83.59375% with 21 lines in your changes missing coverage. Please review.

Project coverage is 91.13%. Comparing base (8d65577) to head (5a06136).

Files with missing lines Patch % Lines
lib/msprime.c 83.59% 12 Missing and 9 partials ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #2303      +/-   ##
==========================================
+ Coverage   90.85%   91.13%   +0.28%     
==========================================
  Files          20       20              
  Lines       11993    11868     -125     
  Branches     2330     2296      -34     
==========================================
- Hits        10896    10816      -80     
+ Misses        606      577      -29     
+ Partials      491      475      -16     
Flag Coverage Δ
C 91.13% <83.59%> (+0.28%) ⬆️
python 98.68% <ø> (ø)

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@jeromekelleher jeromekelleher force-pushed the refactor-smck-distributed branch from 5a06136 to d1981e9 Compare July 23, 2025 15:42
@jeromekelleher jeromekelleher force-pushed the refactor-smck-distributed branch from d1981e9 to ee2b6c0 Compare July 23, 2025 15:48
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I'm going to merge this as it should be significant improvement in terms of code readability, and I think it also fixes a few memory leaks and performance issues. I'll follow up with issues for what remains in order to release the SMC(k) code.

@jeromekelleher jeromekelleher merged commit 6180b4c into tskit-dev:main Jul 23, 2025
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@jeromekelleher jeromekelleher deleted the refactor-smck-distributed branch July 23, 2025 16:10
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