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updates multiqc jinja config to outdate trimmed fastqc
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configs/multiqc_config_template.jinja2

Lines changed: 6 additions & 13 deletions
Original file line numberDiff line numberDiff line change
@@ -36,22 +36,15 @@ module_order:
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- picard
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- samtools
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- bcftools
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- fastqc:
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name: "FastQC (trimmed)"
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anchor: "trimmed"
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info: "This section of the report shows FastQC results after adapter trimming."
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target: ""
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path_filters:
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- "*/qc/fastqc-trimmed/*_fastqc.zip"
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- fastqc:
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name: "FastQC (raw)"
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anchor: "raw"
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path_filters:
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- "*/qc/fastqc-raw/*_fastqc.zip"
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- fastq_screen:
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name: "FastQ Screen (trimmed)"
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name: "FastQ Screen (raw)"
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path_filters:
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- "*/qc/fastq_screen-trimmed/*"
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- "*/qc/fastq_screen-raw/*"
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- verifybamid
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- somalier
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@@ -87,8 +80,8 @@ custom_data:
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quac_watch_fastqc:
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parent_id: "quac_watch"
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id: "quac_watch_fastqc"
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section_name: "FastQC (trimmed)"
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description: 'Quick summary of FastQC (trimmed) results. See <a href="#trimmed">FastQC</a> section below for detailed results.'
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section_name: "FastQC (raw)"
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description: 'Quick summary of FastQC (raw) results. See <a href="#raw">FastQC</a> section below for detailed results.'
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file_format: "yaml"
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plot_type: "table"
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pconfig:
@@ -488,8 +481,8 @@ custom_data:
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quac_watch_fastq_screen:
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parent_id: "quac_watch"
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id: "quac_watch_fastq_screen"
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section_name: "FastQ Screen (trimmed)"
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description: 'Quick summary of FastQ Screen (trimmed) results. See <a href="#fastq_screen-1">FastQ Screen</a> section below for detailed results.'
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section_name: "FastQ Screen (raw)"
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description: 'Quick summary of FastQ Screen (raw) results. See <a href="#fastq_screen-1">FastQ Screen</a> section below for detailed results.'
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file_format: "yaml"
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plot_type: "table"
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pconfig:

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