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AlphaFold 3 container docs#32

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dsajdak merged 12 commits intoubccr:mainfrom
tonykew:AlphaFold-3
Oct 15, 2025
Merged

AlphaFold 3 container docs#32
dsajdak merged 12 commits intoubccr:mainfrom
tonykew:AlphaFold-3

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@tonykew
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@tonykew tonykew commented Aug 6, 2025

AlphaFold 3 container build & run examples.

Tony

@tonykew tonykew changed the title AlphaFold 3 AlphaFold 3 container docs Aug 6, 2025
@tonykew
Fixed Slurm file example links
becd553 
Fix pagination

Tony
@tonykew
Typo
f35b883 
Tony
@zihuahu
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zihuahu commented Aug 13, 2025

  1. I was able to build the .sif file.
  2. In the first example test, I got the following error message

apptainer shell -B /util:/util,/scratch:/scratch,/projects:/projects ./AlphaFold-3-$(arch).sif
FATAL: While checking container encryption: could not open image /projects/academic/zihuahu/container_test/AlphaFold-3-x86_64.sif: failed to retrieve path for /projects/academic/zihuahu/container_test/AlphaFold-3-x86_64.sif: lstat /projects/academic/zihuahu/container_test/AlphaFold-3-x86_64.sif: no such file or directory

change the command to:
apptainer shell AlphaFold-3-aarch64.sif
FATAL: While checking container encryption: could not open image /projects/academic/zihuahu/container_test/AlphaFold-3-aarch64.sif: the image's architecture (arm64) could not run on the host's (amd64)

Monishnd
Monishnd suggested changes Sep 30, 2025
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This review includes grammar fixes and other minor adjustments. I'll test the Slurm scripts soon.

containers/2_ApplicationSpecific/AlphaFold-3/SLURM_GRACE_HOPPER_EXAMPLE.md
for ARM64


# Slurm batch job
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@Monishnd Monishnd Sep 30, 2025

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Not sure if level 1 heading is required here.

tonykew
tonykew commented Oct 13, 2025
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Updates & typos from Monish

@dsajdak dsajdak requested a review from Monishnd October 14, 2025 13:59
@dsajdak dsajdak merged commit a88b766 into ubccr:main Oct 15, 2025
@tonykew tonykew deleted the AlphaFold-3 branch October 21, 2025 13:39
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@dsajdak dsajdak dsajdak approved these changes

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@Monishnd Monishnd Monishnd approved these changes

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@tonykew @zihuahu @dsajdak @Monishnd