Release 7.0.0

Automatically generated after merging #258.

What's Changed

• Version-pin Action versions from common repository by @nwiltsie in #255
• Bump actions/checkout from 4 to 5 by @dependabot[bot] in #256
• Validation cleanup by @yashpatel6 in #257
• Prepare for version 7.0.0 by @boutros-lab-infrastructure-owner in #258

New Contributors

• @dependabot[bot] made their first contribution in #256

Full Changelog: v7.0.0-rc.4...v7.0.0

Release 7.0.0-rc.4

Automatically generated after merging #253.

What's Changed

• Pipeline updates by @yashpatel6 in #251
• Adding mtDNA CN pipeline by @yashpatel6 in #252
• Prepare for version 7.0.0-rc.4 by @boutros-lab-infrastructure-owner in #253

Full Changelog: v7.0.0-rc.3...v7.0.0-rc.4

Release 7.0.0-rc.3

Automatically generated after merging #250.

What's Changed

• Fix VCF handling bug by @yashpatel6 in #249
• Prepare for version 7.0.0-rc.3 by @boutros-lab-infrastructure-owner in #250

Full Changelog: v7.0.0-rc.2...v7.0.0-rc.3

Release v7.0.0-rc.2

What's Changed

• VCF Entrypoint by @yashpatel6 in #248

Full Changelog: v7.0.0-rc.1...v7.0.0-rc.2

Release 7.0.0-rc.1

Automatically generated after merging #247.

What's Changed

• Add StableLift - sSNV by @yashpatel6 in #239
• SV Liftover Code by @yashpatel6 in #240
• gSNP Liftover by @yashpatel6 in #241
• Variant annotation starting with gSNP calls by @yashpatel6 in #242
• Update submodules by @yashpatel6 in #243
• Update log message by @yashpatel6 in #246
• Genetic Ancestry by @yashpatel6 in #244
• Prepare for version 7.0.0-rc.1 by @boutros-lab-infrastructure-owner in #247

Full Changelog: v6.2.0...v7.0.0-rc.1

Release 6.2.0

Automatically generated after merging #238.

What's Changed

• Add pipelines to dependabot by @yashpatel6 in #234
• Merging gitsubmodule package system into one by @yashpatel6 in #235
• Update BAM2FASTQ Version by @yashpatel6 in #237
• Prepare for version 6.2.0 by @boutros-lab-infrastructure-owner in #238

Full Changelog: v6.1.0...v6.2.0

Release 6.1.0

Automatically generated after merging #233.

What's Changed

• Documentation update by @yashpatel6 in #223
• Add sanitization to allow special characters such as underscores in IDs by @yashpatel6 in #225
• Add release management workflows by @nwiltsie in #229
• Update cluster reference paths by @nwiltsie in #230
• Add nextflow.config to release management process by @nwiltsie in #231
• Adding additional test cases by @yashpatel6 in #226
• Prepare for version 6.1.0 by @boutros-lab-infrastructure-owner in #233

New Contributors

• @boutros-lab-infrastructure-owner made their first contribution in #233

Full Changelog: v6.0.0...v6.1.0

metapipeline-DNA v6.0.0

What's Changed

• Update dependabot to group common submodules by @nwiltsie in #218
• Pipeline version updates by @yashpatel6 in #220
• Release v6.0.0 by @yashpatel6 in #221

Full Changelog: v6.0.0-rc.6...v6.0.0

metapipeline-DNA v6.0.0-rc.6

What's Changed

• Capture and consolidate detailed logs for each sample by @nwiltsie in #206
• CSV support by @yashpatel6 in #210
• Fix validation bug by @yashpatel6 in #213
• Add optional status_email_address parameter for child pipeline updates by @nwiltsie in #214
• Release 6.0.0-rc.6 by @yashpatel6 in #217

Full Changelog: v6.0.0-rc.5...v6.0.0-rc.6

metapipeline-DNA v6.0.0-rc.5

What's Changed

• Add call-SRC with support for multiple combinations by @yashpatel6 in #204
• Fix WGS submission by @yashpatel6 in #209

Full Changelog: v6.0.0-rc.4...v6.0.0-rc.5