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19 Open 435 Closed
19 Open 435 Closed
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Issues list

Cache genome sequence
#860 opened Mar 18, 2024 by zhuchcn
Additional testing of merged MNVs
#822 opened Nov 8, 2023 by lydiayliu
Alternative Way to Handle Trypsin Exception enhancement New feature or request
#821 opened Oct 26, 2023 by zhuchcn
Unconsistency between splitFasta and summarizeFasta enhancement New feature or request
#819 opened Oct 24, 2023 by zhuchcn
1
Support use of junction files from RNA-seq alignment tools enhancement New feature or request
#757 opened Jun 29, 2023 by lydiayliu
Support de novo transcript GTF enhancement New feature or request
#756 opened Jun 29, 2023 by lydiayliu
Consider setting upper limit for miscleacages enhancement New feature or request priority: 2day Issue to be fixed in 2 or more days.
#740 opened May 17, 2023 by zhuchcn
Consider adding annotate peptide in mpg enhancement New feature or request
#713 opened Apr 5, 2023 by lydiayliu
parseVEP crashes when reading extremely large files enhancement New feature or request
#683 opened Feb 28, 2023 by lydiayliu
3
Output list of canonical proteome false positive peptides enhancement New feature or request
#660 opened Jan 23, 2023 by lydiayliu
1
Does mpg support no cleavage? enhancement New feature or request
#609 opened Nov 13, 2022 by lydiayliu
@zhuchcn
7
additional reference sources enhancement New feature or request
#548 opened Aug 1, 2022 by lydiayliu
Switch parseVEP to using column names enhancement New feature or request
#542 opened Jul 27, 2022 by lydiayliu
Currently not possible to turn off max_length enhancement New feature or request
#522 opened Jul 19, 2022 by lydiayliu
@zhuchcn
4
extending order source beyond exact matches effort: 8 Needs 8 points of effect to fix enhancement New feature or request
#450 opened May 11, 2022 by lydiayliu
4
Make GVF metadata fields the same order as INFO column effort: 5 Needs 5 points of effect to fix priority: 2day Issue to be fixed in 2 or more days.
#423 opened Mar 15, 2022 by zhuchcn
1
potentially order transcripts by complexity in parallelization enhancement New feature or request
#348 opened Jan 17, 2022 by lydiayliu
Enable to turn of the inclusion and exclusion of leading M enhancement New feature or request
#51 opened Aug 9, 2021 by zhuchcn
1
streamline parseVEP for multiple files enhancement New feature or request
#20 opened Jul 13, 2021 by lydiayliu
ProTip! Exclude everything labeled bug with -label:bug.