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Manta fails to run on F2 node. The process call_gSV_Manta stops halfway after execution with the memory error below.
[WorkflowRunner] [ERROR] Exception: Task memory requirement exceeds full available resources
- v4.0.0-rc.1
- Cluster - SLURM
- Node type - F2
- Submission method - submission script
- Actual submission script:
python /hot/user/mmootor/tool-submit-nf/submit_nextflow_pipeline.py --nextflow_script /hot/user/mmootor/git/pipeline-call-gSV/pipeline/call-gSV.nf --nextflow_config /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/unreleased/mmootor-fix-F2-detection/config/fix-F2-detection-A-mini-hg38.config --pipeline_run_name gSV-fix-F2-A-mini --partition_type F2 --email [email protected] - Log file - /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/4.0.0-rc.1/mmootor-fix-F2-detection/gSV-fix-F2-A-mini.log
- Config file - /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/4.0.0-rc.1/mmootor-fix-F2-detection/config/fix-F2-detection-A-mini-hg38.config
- Path to the working directory - /hot/software/pipeline/pipeline-call-gSV/Nextflow/development/4.0.0-rc.1/mmootor-fix-F2-detection/A-mini/
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