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Remove cluster paths from README

Status: Open.

#188 In uclahs-cds/pipeline-call-gSV;

· Faizal-Eeman opened on Jul 3, 2025

Add hipSTR

Status: Open.

#183 In uclahs-cds/pipeline-call-gSV;

· yashpatel6 opened on Apr 14, 2025

output FILTER==PASS variants from Manta and Delly output

Status: Open.

#176 In uclahs-cds/pipeline-call-gSV;

· tnyamaguchi opened on Nov 12, 2024

Use <code>store_object_as_json</code> to store parameters

standardization

Status: Open.

#169 In uclahs-cds/pipeline-call-gSV;

· nwiltsie opened on Aug 12, 2024

<code>Cue</code> addition

Status: Open.

#168 In uclahs-cds/pipeline-call-gSV;

· yashpatel6 opened on Jul 22, 2024

Remove <code>regenotype gSV|gCNV</code> workflow from this pipeline

Status: Open.

#133 In uclahs-cds/pipeline-call-gSV;

· Faizal-Eeman opened on Mar 13, 2024

Add GATK-gCNV

Status: Open.

#91 In uclahs-cds/pipeline-call-gSV;

· Faizal-Eeman opened on Aug 22, 2023

call_gCNV_Delly; Please increase the window size. Coverage is too low!

Status: Open.

#87 In uclahs-cds/pipeline-call-gSV;

· rhughwhite opened on Jan 27, 2023

Move DELLY stats from <code>intermediate</code> to <code>QC</code> dir

Status: Open.

#78 In uclahs-cds/pipeline-call-gSV;

· Faizal-Eeman opened on Nov 29, 2022

Manta not running on F2 node

Status: Open.

#58 In uclahs-cds/pipeline-call-gSV;

· Faizal-Eeman opened on Jul 29, 2022

Incorporate delly filters as parameters

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In uclahs-cds/pipeline-call-gSV;

· YBerkovich opened on Feb 16, 2021