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Plotting support for mouse samples

Status: Open.

#195 In uclahs-cds/pipeline-call-sSV;

· yashpatel6 opened on Mar 5, 2025

Manta default calls INV as BND -- May need post-processing

Status: Open.

#192 In uclahs-cds/pipeline-call-sSV;

· WuSelina opened on Feb 26, 2025

Document parameter recommendations

Status: Open.

#172 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Sep 5, 2024

Improve algorithm documentation

Status: Open.

#171 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Sep 5, 2024

<code>Cue</code> addition

Status: Open.

#169 In uclahs-cds/pipeline-call-sSV;

· yashpatel6 opened on Jul 22, 2024

Use <code>methods.setup_process_afterscript()</code> for process logs

enhancementNew feature or requestNew feature or request

high priorityHigh priority issueHigh priority issue

Status: Open.

#166 In uclahs-cds/pipeline-call-sSV;

· nwiltsie opened on Jun 17, 2024

StructuralVariantAnnotation

Status: Open.

#152 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Apr 24, 2024

DELLY Somatic CNV calling

Status: Open.

#144 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Mar 15, 2024

output <code>FILTER==PASS</code> variants from Manta output

Status: Open.

#138 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Feb 26, 2024

Add STIX Support

Status: Open.

#101 In uclahs-cds/pipeline-call-sSV;

· WuSelina opened on May 22, 2023

Add workflow.nf for DELLY and BCFtools

enhancementNew feature or requestNew feature or request

Status: Open.

#81 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Nov 8, 2022

Output folder name for stats files

Status: Open.

#79 In uclahs-cds/pipeline-call-sSV;

· Faizal-Eeman opened on Oct 29, 2022