Release 1.3.1

Automatically generated after merging #86.

What's Changed

• Resolve global config relative to NFT_TESTDIR by @yashpatel6 in #85
• Prepare for version 1.3.1 by @boutros-lab-infrastructure-owner in #86

Full Changelog: v1.3.0...v1.3.1

Release 1.3.0

Automatically generated after merging #84.

What's Changed

• Update to NFTest to allow separation of tests from public code by @yashpatel6 in #81
• Prepare for version 1.3.0 by @boutros-lab-infrastructure-owner in #84

Full Changelog: v1.2.1...v1.3.0

Release 1.2.1

Automatically generated after merging #80.

What's Changed

• Fix hatch-vcs by ignoring alias tags by @nwiltsie in #79
• Prepare for version 1.2.1 by @boutros-lab-infrastructure-owner in #80

Full Changelog: v1.2.0...v1.2.1

Release 1.2.0

Automatically generated after merging #77.

What's Changed

• Catch failing test cases by @nwiltsie in #70
• Add --report flag to save JSON test summary by @nwiltsie in #71
• Add release management workflows by @nwiltsie in #72
• Migrate package configuration to pyproject.toml, establish dynamic versioning by @nwiltsie in #75
• Bump actions/setup-python from 4 to 5 by @dependabot in #73
• Prepare for version 1.2.0 by @boutros-lab-infrastructure-owner in #77

New Contributors

• @dependabot made their first contribution in #73
• @boutros-lab-infrastructure-owner made their first contribution in #77

Full Changelog: v1.1.0...v1.2.0

tool-NFTest v1.1.0

What's Changed

• Print usage when no argument is given, exit with aggregated test status by @nwiltsie in #55
• Use shell=False for subprocess calls by @nwiltsie in #58
• Add GitHub action for pytest by @nwiltsie in #59
• Add badge for README by @yashpatel6 in #60
• Reference checksum validation by @yashpatel6 in #61
• Capture Nextflow logs via syslog rather than console by @nwiltsie in #62
• Upgrade to latest static analysis Action by @nwiltsie in #64
• Standardize code format with ruff by @nwiltsie in #65
• Resolve non-determinism with NFTestENV tests by @nwiltsie in #66
• Encapsulate NFTestAssert class, rewrite tests (attempt 2) by @nwiltsie in #68
• Prepare for 1.1.0 release by @nwiltsie in #69

Full Changelog: v1.0.1...v1.1.0

tool-NFTest v1.0.1

What's Changed

• Fix path typing by @yashpatel6 in #57

Full Changelog: v1.0.0...v1.0.1

tool-NFTest v1.0.0

What's Changed

• Move linting configuration to .cicd-env file by @nwiltsie in #50
• Allow patterns in file paths by @yashpatel6 in #51

Full Changelog: v1.0.0-rc.4...v1.0.0

tool-NFTest v1.0.0-rc.4

CHANGELOG

Changed

• Wrap all NextFlow output with real-time line-by-line log statements
• Wrap custom comparison to log through NFTest logger
• Add DEBUG lines about specific asserts
• Assert that actual files are modified by pipelines

Fixed

• Tests after real-time logging

tool-NFTest v1.0.0-rc.3

CHANGELOG

Fixed

• Properly set default value of clean_logs according to case and global settings

tool-NFTest v1.0.0-rc.2

CHANGELOG

Added

• Case name to output directory path to avoid over-writing
• Support for Nextflow profiles

Changed

• Override skip from configuration YAML for command line test cases