Broad WM Documentation Update

[jdkublnick]

Commit Queue Requirements:

• This PR addresses a relevant WM issue (if not, create an issue).
• All subcomponent pull requests (if any) have been reviewed by their code managers.
• Run the full Intel+GNU RT suite (compared to current baselines), preferably on Ursa (Derecho or Hercules are acceptable alternatives). Exceptions: documentation-only PRs, CI-only PRs, etc.
  • Commit log file w/full results from RT suite run (if applicable). N/A
  • Verify that test_changes.list indicates which tests, if any, are changed by this PR. Commit test_changes.list, even if it is empty.
• Fill out all sections of this template.

---

Description:

This PR updates several parts of the UFS WM documentation to include the following. All instances of "Hera" were updated to "Ursa". Common modules in the build/run chapter were updated. Instances of "FV3atm" were updated to "UFSatm". File paths pertaining to the UFSatm and Ursa were updated/added. Default variables were updated in the building/running chapter. FHZ was added to the operational requirement table. HSD run directory path was updated. Directory structure was updated to reflect UFSatm change. Added valid -DAPP configuration options, aswell as updated list of supported physics suites. Added additional cmake build options that were not previously documented, Added three new terms to the glossary. Updated MOM6, CICE6, and HYCOM input files.

Commit Message:

Updating documentation.

Priority:

• [x ] Normal

Git Tracking

UFSWM:

• Closes Update "Hera" to "Ursa" in the documentation #2875

Sub component Pull Requests:

N/A

UFSWM Blocking Dependencies:

N/A

Documentation:

• [ X] Relevant updates are included with this PR.

---

Changes

Regression Test Changes (Please commit test_changes.list):

• [ X] No Baseline Changes.

Input data Changes:

• [X ] None.

Library Changes/Upgrades:

• [X ] No Updates

---

Testing Log:

• RDHPCS
  • Hera
  • Orion
  • Hercules
  • GaeaC6
  • Derecho
  • Ursa
• WCOSS2
  • Dogwood/Cactus
  • Acorn
• CI
• opnReqTest (complete task if unnecessary)