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* run and move the input files in regression/input_files * call new run_tracking_inputs.py file from the ci (to test if it works as expected), removing print statements from the .py file too * try to get run-tracking-inputs to run on my fork * rename tracked mfiles in tracking dir to be _MFILE.DAT * remove print statement * delete commented out lines * work before updating main * parse args in run_tracking_inputs and call script in ci * changes from review comments
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,73 @@ | ||
| """Run the tracked files and move into tracking directory.""" | ||
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| import argparse | ||
| from pathlib import Path | ||
| import shutil | ||
| import subprocess | ||
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| from tracking_data import ProcessTracker | ||
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| def run_and_move_tracked_files(arguments): | ||
| """ | ||
| Run PROCESS on the tracked files and move the MFiles to the tracking directory. | ||
| """ | ||
| path_to_tracking_files = Path(arguments.input_locs) | ||
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| input_files = path_to_tracking_files.glob("*.IN.DAT") | ||
| tracking_dir = Path(__file__).parent | ||
| for file_path in input_files: | ||
| try: | ||
| subprocess.run(f"process -i {file_path}", shell=True, check=True) | ||
| except subprocess.CalledProcessError: | ||
| continue | ||
| created_mfile = file_path.with_name( | ||
| file_path.name.replace(".IN.DAT", ".MFILE.DAT") | ||
| ) | ||
| moved_mfile = created_mfile.with_name( | ||
| created_mfile.name.replace(".MFILE.DAT", "_MFILE.DAT") | ||
| ) | ||
| created_mfile.rename(tracking_dir / moved_mfile.name) | ||
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| def tracking(arguments): | ||
| """ | ||
| Call the ProcessTracker, move the MFiles to the database and rename. | ||
| """ | ||
| path_to_tracking_mfiles = Path(__file__).parent | ||
| mfiles = path_to_tracking_mfiles.glob("*_MFILE.DAT") | ||
| for mfile_path in mfiles: | ||
| ProcessTracker( | ||
| mfile=mfile_path, | ||
| database=arguments.db, | ||
| message=arguments.commit, | ||
| hashid=arguments.hash, | ||
| ) | ||
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| copied_mfile = shutil.copy(mfile_path, Path(arguments.db) / mfile_path.name) | ||
| moved_mfile_name = copied_mfile.with_name( | ||
| copied_mfile.name.replace("_MFILE.DAT", f"_MFILE_{arguments.hash}.DAT") | ||
| ) | ||
| copied_mfile.rename(moved_mfile_name) | ||
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| if __name__ == "__main__": | ||
| parser = argparse.ArgumentParser() | ||
| subparsers = parser.add_subparsers(help="Choose the usage mode", dest="command") | ||
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| # Run command | ||
| subparser_run = subparsers.add_parser("run") | ||
| subparser_run.add_argument("input_locs", type=str) | ||
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| # Tracking command | ||
| subparser_trk = subparsers.add_parser("track") | ||
| subparser_trk.add_argument("db", type=str) | ||
| subparser_trk.add_argument("commit", type=str) | ||
| subparser_trk.add_argument("hash", type=str) | ||
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| arguments = parser.parse_args() | ||
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| if arguments.command == "run": | ||
| run_and_move_tracked_files(arguments) | ||
| else: | ||
| tracking(arguments) |