⚡ Bolt: Implement batch fetching for uniprot command #284
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Implements concurrent fetching for the `uniprot` command using a batch size of 5. This improves performance when processing multiple accession numbers by utilizing `Promise.all` to fetch entries in parallel, while preserving output order and existing error handling behavior. Added a test case for multiple batches (7 items) to ensure robustness. Removed `.jules/bolt.md`. Ensured no changes to `yarn.lock`.
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Pull request overview
This PR implements batch processing for the uniprot command to improve performance when fetching multiple UniProt entries. Instead of fetching entries sequentially, the command now processes them in batches of 5 concurrent requests, significantly reducing total execution time for large lists of accession numbers.
Key Changes:
- Implemented batching logic that groups accession numbers into batches of 5
- Added a new
processBatchmethod that usesPromise.allto fetch multiple entries concurrently while preserving output order - Enhanced input handling to skip empty lines
Reviewed changes
Copilot reviewed 2 out of 2 changed files in this pull request and generated no comments.
| File | Description |
|---|---|
| lib/commands/uniprot.ts | Added batch collection logic in the main loop, implemented processBatch method for concurrent fetching, and added empty line filtering |
| tests/commands/uniprot.test.ts | Added test case to verify correct behavior when processing more than 5 items (spanning multiple batches) |
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💡 What: Implemented batch processing for the
uniprotcommand.🎯 Why: The previous implementation fetched UniProt entries sequentially, which is inefficient for large lists of accession numbers.
📊 Impact: Reduces total execution time by allowing up to 5 concurrent requests.
🔬 Measurement:
npm testpasses, verifying that functionality (including output order) is preserved. Added a specific test case for batching > 5 items. Conceptual speedup is approx 5x for network-bound operations.PR created automatically by Jules for task 10954714103914360984 started by @bmesuere