6.4.3

Version 6.4.3 fixes some annoying bugs in Unipept and improves the user experience.

Bug fixes:

• Fix Firefox going out-of-memory for larger peptonizer analyses (#1769)
• Fix crash of Unipept when loading older projects that did not keep track of the total peptides (#1770)

6.4.2

This is yet another maintenance release of Unipept, bringing a lot of smaller bug fixes, speed improvements and quality-of-life improvements.

Enhancements:

• Improved performance of converting data from Unipept API to internal structure (#1749, #1750, #1751, #1752)
• Removed redundant and obsolete dependencies (#1760)

Bug fixes:

• Add fix to prevent potential stack overflow exceptions (#1755)
• Add fix to prevent potential XSS attacks (#1761)

6.4.1

This is a maintenance release of the Unipept Web Application that provides a fix for some minor issues and bumps all of the dependencies to the latest version.

Bug fixes:

• Make sure that the single peptide analysis uses the same taxon invalidation rules as the metaproteomics analysis (#1731)
• Fixed an issue where "unknown" was shown in the LCA lineage during the single peptide analysis (#1731)
• Moved Umami tracking to self-hosted instance (#1748)

Dependency updates:

• Bump all dependencies to the latest stable versions (#1743)

6.4.0

This is a small release of Unipept that introduces a few new options.

New features / enhancements:

• Add support for cRAP filtering of matched peptides (#1727)
• Remove old checkbox for missed cleavage handling (#1727)

6.3.5

This is a small maintenance release of Unipept that introduces a new privacy policy page and updates a lot of the underlying dependencies to their latest version.

Enhancements:

• Added a new privacy policy page (#1729)

Dependency updates:

• Bump js-yaml to v4.1.1 (#1726)
• Bump sass to v1.93.3 (#1725)
• Bump Typescript to v5.9.3 (#1724)
• Bump eslint to 9.39.0 (#1723)
• Bump @babel/types to 7.28.5 (#1722)
• Bump Vuetify to 3.10.8 (#1721)

6.3.4

This is a maintenance release for Unipept that provides some bug fixes and minor quality-of-life improvements.

Bug fixes:

• Fixed an issue where proteins where requested from the Unipept API multiple items (#1710)
• Fixed an issue where only a fixed amount of pills are rendered in the database summary view (#1710)
• Improved performance of uploading protein lists for custom database construction (#1710)
• Fixed issue that made it impossible to correctly sort proteomes in the proteome browser by taxon name or protein count (#1699)
• Fixed web browser security blocks download of large project exports (#1701)
• Implement a loading indicator for the single peptide analysis page (#1716)
• Fixed "show all" button for the peptide summary table (#1717

Dependency updates:

• Bump SharedCore to v1.0.0-alpha.9 (#1704)
• Bump Vue to v3.5.22 (#1711)
• Removed @vueuse/components dependency (#1719)
• Bump vue-tsc to v3.1.0 (#1714)
• Bump eslint-plugin-vue to v10.5.0 (#1713)
• Bump vite to v6.4.1 (#1718)

6.3.3

This is a small release containing some important bug fixes for the new features that have been published in version 6.3.0 of Unipept.

Bug fixes:

• Fix removal of rows in the comparative heatmap (#1696)
• Fix navigation drawer switched too soon to mobile variant (#1697)
• Fix label of "add row" button in comparative heatmap (#1698)

6.3.2

This is an important hotfix release of Unipept. It fixes an issue where the project explorer view on the left was not always visible (making it impossible to switch between samples).

Bug fixes:

• Fixed navigation drawer not opening by default on large screens.

6.3.1

This is a small release for Unipept with some bug fixes and quality of life improvements. Biggest change of this update is the improvements of Unipept's UI for smaller displays (such as tablets and phones). While not perfect, Unipept is now useable on these small devices.

Bug fixes:

• Improved UI for smaller displays (#1692)
• Fixed adding multiple samples at the same time also caused these to be analysed at the same time (#1690)
• Fixed drag and drop for multiple files (#1691)
• Add support for Umami analytics (#1689)

6.3.0

Unipept Web v6.3.0 is a major update that brings the last remaining features from the desktop app to the web, along with several exciting new capabilities. With this release, you can now create and export projects, share them with collaborators, perform comparative analyses between metaproteomics samples, and seamlessly pick up where you left off.

Projects are automatically saved with every change you make—whether it’s a button click or a data update—so your work is preserved even if you close the app. You can also download your projects as .unipept files for safekeeping or sharing.

The comparative analysis feature—well known from the desktop app—has now been fully integrated into the Unipept Web app and completely reimagined. The heatmap has been redesigned from the ground up to be more intuitive and visually clear, backed by a robust new statistical framework. We've also introduced a highly requested taxonomic bar plot, which makes it easy to compare the taxonomic composition of different samples side by side.

In addition to these features, we've introduced a refreshed interface that aligns Unipept with the look and feel of modern web applications. This new design makes it easier to manage large-scale analyses and improves overall usability.

We've also significantly improved browser performance. Say goodbye to unresponsive clicks, lag, and "unresponsive webpage" errors. Furthermore, as of this release, the Peptonizer is up to 4× faster in Chrome and Firefox (Safari performance remains unchanged) and can now fully utilize modern multicore CPUs.

New features / enhancements:

• Projects are now supported on the web! (#1660)
• New comparative analysis pipeline with completely redesigned heatmap and new comparative bar plot (#1672)
• New taxonomic bar plot visualization (#1669)
• Redesigned homepage and analysis page (#1674, #1677, #1679, #1680)
• Up to 4x speedup of the Peptonizer in Chrome and Firefox on systems with a modern multicore CPU

Bug fixes:

• Fixed a bug where all I's where wrongly replaced by Ls when "equate I/L" was enabled (#1686)
• Fixed Unipept sometimes "hangs" when large samples are analyses or manipulated (#1672)