Merge pull request #631 from m7mdhka/main

Integrating FAISS in VannaAI

src/vanna/faiss/__init__.py

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+from .faiss import FAISS

src/vanna/faiss/faiss.py

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+import os 
+import json
+import uuid
+from typing import List, Dict, Any
+
+import faiss
+import numpy as np
+import pandas as pd
+
+from ..base import VannaBase
+from ..exceptions import DependencyError
+
+class FAISS(VannaBase):
+    def __init__(self, config=None):
+        if config is None:
+            config = {}
+
+        VannaBase.__init__(self, config=config)
+
+        try:
+            import faiss
+        except ImportError:
+            raise DependencyError(
+                "FAISS is not installed. Please install it with 'pip install faiss-cpu' or 'pip install faiss-gpu'"
+            )
+
+        try:
+            from sentence_transformers import SentenceTransformer
+        except ImportError:
+            raise DependencyError(
+                "SentenceTransformer is not installed. Please install it with 'pip install sentence-transformers'."
+            )
+
+        self.path = config.get("path", ".")
+        self.embedding_dim = config.get('embedding_dim', 384)
+        self.n_results_sql = config.get('n_results_sql', config.get("n_results", 10))
+        self.n_results_ddl = config.get('n_results_ddl', config.get("n_results", 10))
+        self.n_results_documentation = config.get('n_results_documentation', config.get("n_results", 10))
+        self.curr_client = config.get("client", "persistent")
+
+        if self.curr_client == 'persistent':
+            self.sql_index = self._load_or_create_index('sql_index.faiss')
+            self.ddl_index = self._load_or_create_index('ddl_index.faiss')
+            self.doc_index = self._load_or_create_index('doc_index.faiss')
+        elif self.curr_client == 'in-memory':
+            self.sql_index = faiss.IndexFlatL2(self.embedding_dim)
+            self.ddl_index = faiss.IndexFlatL2(self.embedding_dim)
+            self.doc_index = faiss.IndexFlatL2(self.embedding_dim)
+        elif isinstance(self.curr_client, list) and len(self.curr_client) == 3 and all(isinstance(idx, faiss.Index) for idx in self.curr_client):
+            self.sql_index = self.curr_client[0]
+            self.ddl_index = self.curr_client[1]
+            self.doc_index = self.curr_client[2]
+        else:
+            raise ValueError(f"Unsupported storage type was set in config: {self.curr_client}")
+
+        self.sql_metadata: List[Dict[str, Any]] = self._load_or_create_metadata('sql_metadata.json')
+        self.ddl_metadata: List[Dict[str, str]] = self._load_or_create_metadata('ddl_metadata.json')
+        self.doc_metadata: List[Dict[str, str]] = self._load_or_create_metadata('doc_metadata.json')
+
+        model_name = config.get('embedding_model', 'all-MiniLM-L6-v2')
+        self.embedding_model = SentenceTransformer(model_name)
+
+    def _load_or_create_index(self, filename):
+        filepath = os.path.join(self.path, filename)
+        if os.path.exists(filepath):
+            return faiss.read_index(filepath)
+        return faiss.IndexFlatL2(self.embedding_dim)
+
+    def _load_or_create_metadata(self, filename):
+        filepath = os.path.join(self.path, filename)
+        if os.path.exists(filepath):
+            with open(filepath, 'r') as f:
+                return json.load(f)
+        return []
+
+    def _save_index(self, index, filename):
+        if self.curr_client == 'persistent':
+            filepath = os.path.join(self.path, filename)
+            faiss.write_index(index, filepath)
+
+    def _save_metadata(self, metadata, filename):
+        if self.curr_client == 'persistent':
+            filepath = os.path.join(self.path, filename)
+            with open(filepath, 'w') as f:
+                json.dump(metadata, f)
+
+    def generate_embedding(self, data: str, **kwargs) -> List[float]:
+        embedding = self.embedding_model.encode(data)
+        assert embedding.shape[0] == self.embedding_dim, \
+            f"Embedding dimension mismatch: expected {self.embedding_dim}, got {embedding.shape[0]}"
+        return embedding.tolist()
+
+    def _add_to_index(self, index, metadata_list, text, extra_metadata=None) -> str:
+        embedding = self.generate_embedding(text)
+        index.add(np.array([embedding], dtype=np.float32))
+        entry_id = str(uuid.uuid4())
+        metadata_list.append({"id": entry_id, **(extra_metadata or {})})
+        return entry_id
+
+    def add_question_sql(self, question: str, sql: str, **kwargs) -> str:
+        entry_id = self._add_to_index(self.sql_index, self.sql_metadata, question + " " + sql, {"question": question, "sql": sql})
+        self._save_index(self.sql_index, 'sql_index.faiss')
+        self._save_metadata(self.sql_metadata, 'sql_metadata.json')
+        return entry_id
+
+    def add_ddl(self, ddl: str, **kwargs) -> str:
+        entry_id = self._add_to_index(self.ddl_index, self.ddl_metadata, ddl, {"ddl": ddl})
+        self._save_index(self.ddl_index, 'ddl_index.faiss')
+        self._save_metadata(self.ddl_metadata, 'ddl_metadata.json')
+        return entry_id
+
+    def add_documentation(self, documentation: str, **kwargs) -> str:
+        entry_id = self._add_to_index(self.doc_index, self.doc_metadata, documentation, {"documentation": documentation})
+        self._save_index(self.doc_index, 'doc_index.faiss')
+        self._save_metadata(self.doc_metadata, 'doc_metadata.json')
+        return entry_id
+
+    def _get_similar(self, index, metadata_list, text, n_results) -> list:
+        embedding = self.generate_embedding(text)
+        D, I = index.search(np.array([embedding], dtype=np.float32), k=n_results)
+        return [] if len(I[0]) == 0 or I[0][0] == -1 else [metadata_list[i] for i in I[0]]
+
+    def get_similar_question_sql(self, question: str, **kwargs) -> list:
+        return self._get_similar(self.sql_index, self.sql_metadata, question, self.n_results_sql)
+
+    def get_related_ddl(self, question: str, **kwargs) -> list:
+        return [metadata["ddl"] for metadata in self._get_similar(self.ddl_index, self.ddl_metadata, question, self.n_results_ddl)]
+
+    def get_related_documentation(self, question: str, **kwargs) -> list:
+        return [metadata["documentation"] for metadata in self._get_similar(self.doc_index, self.doc_metadata, question, self.n_results_documentation)]
+
+    def get_training_data(self, **kwargs) -> pd.DataFrame:
+        sql_data = pd.DataFrame(self.sql_metadata)
+        sql_data['training_data_type'] = 'sql'
+
+        ddl_data = pd.DataFrame(self.ddl_metadata)
+        ddl_data['training_data_type'] = 'ddl'
+
+        doc_data = pd.DataFrame(self.doc_metadata)
+        doc_data['training_data_type'] = 'documentation'
+
+        return pd.concat([sql_data, ddl_data, doc_data], ignore_index=True)
+
+    def remove_training_data(self, id: str, **kwargs) -> bool:
+        for metadata_list, index, index_name in [
+            (self.sql_metadata, self.sql_index, 'sql_index.faiss'),
+            (self.ddl_metadata, self.ddl_index, 'ddl_index.faiss'),
+            (self.doc_metadata, self.doc_index, 'doc_index.faiss')
+        ]:
+            for i, item in enumerate(metadata_list):
+                if item['id'] == id:
+                    del metadata_list[i]
+                    new_index = faiss.IndexFlatL2(self.embedding_dim)
+                    embeddings = [self.generate_embedding(json.dumps(m)) for m in metadata_list]
+                    if embeddings:
+                        new_index.add(np.array(embeddings, dtype=np.float32))
+                    setattr(self, index_name.split('.')[0], new_index)
+
+                    if self.curr_client == 'persistent':
+                        self._save_index(new_index, index_name)
+                        self._save_metadata(metadata_list, f"{index_name.split('.')[0]}_metadata.json")
+
+                    return True
+        return False
+
+    def remove_collection(self, collection_name: str) -> bool:
+        if collection_name in ["sql", "ddl", "documentation"]:
+            setattr(self, f"{collection_name}_index", faiss.IndexFlatL2(self.embedding_dim))
+            setattr(self, f"{collection_name}_metadata", [])
+
+            if self.curr_client == 'persistent':
+                self._save_index(getattr(self, f"{collection_name}_index"), f"{collection_name}_index.faiss")
+                self._save_metadata([], f"{collection_name}_metadata.json")
+
+            return True
+        return False