annotation edits

vjjan91 · Sep 8, 2023 · d13ef06 · d13ef06
1 parent 817fd72
commit d13ef06
Showing 1 changed file with 12 additions and 6 deletions.
diff --git a/03_eBird-data-processing.Rmd b/03_eBird-data-processing.Rmd
@@ -27,9 +27,12 @@ readcleanrawdata = function(rawpath)
   
   preimp = c("COMMON.NAME","OBSERVATION.COUNT",
              "LOCALITY.ID","LOCALITY.TYPE", "STATE", "COUNTRY",
-             "LATITUDE","LONGITUDE","OBSERVATION.DATE","TIME.OBSERVATIONS.STARTED","OBSERVER.ID",
-             "PROTOCOL.TYPE","DURATION.MINUTES","EFFORT.DISTANCE.KM", "REVIEWED",
-             "NUMBER.OBSERVERS","ALL.SPECIES.REPORTED","GROUP.IDENTIFIER","SAMPLING.EVENT.IDENTIFIER","APPROVED","CATEGORY")
+             "LATITUDE","LONGITUDE","OBSERVATION.DATE",
+             "TIME.OBSERVATIONS.STARTED","OBSERVER.ID",
+             "PROTOCOL.TYPE","DURATION.MINUTES","EFFORT.DISTANCE.KM",
+             "REVIEWED","NUMBER.OBSERVERS","ALL.SPECIES.REPORTED",
+             "GROUP.IDENTIFIER","SAMPLING.EVENT.IDENTIFIER","APPROVED",
+             "CATEGORY")
   
   nms = read.delim(rawpath, nrows = 1, sep = "\t", header = T, quote = "", stringsAsFactors = F, na.strings = c(""," ",NA))
   nms = names(nms)
@@ -42,9 +45,12 @@ readcleanrawdata = function(rawpath)
   
   imp = c("COMMON.NAME","OBSERVATION.COUNT",
           "LOCALITY.ID","LOCALITY.TYPE", "STATE", "COUNTRY",
-          "LATITUDE","LONGITUDE","OBSERVATION.DATE","TIME.OBSERVATIONS.STARTED","OBSERVER.ID",
-          "PROTOCOL.TYPE","DURATION.MINUTES","EFFORT.DISTANCE.KM", "SAMPLING.EVENT.IDENTIFIER",
-          "NUMBER.OBSERVERS","ALL.SPECIES.REPORTED","group.id", "CATEGORY","no.sp")
+          "LATITUDE","LONGITUDE","OBSERVATION.DATE",
+          "TIME.OBSERVATIONS.STARTED","OBSERVER.ID",
+          "PROTOCOL.TYPE","DURATION.MINUTES","EFFORT.DISTANCE.KM",
+          "SAMPLING.EVENT.IDENTIFIER",    
+          "NUMBER.OBSERVERS","ALL.SPECIES.REPORTED","group.id",
+          "CATEGORY","no.sp")
   
   days = c(31,28,31,30,31,30,31,31,30,31,30,31)
   cdays = c(0,31,59,90,120,151,181,212,243,273,304,334)