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Pull requests: waveygang/wfmash

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Pull requests list

Light alignment filtering based on alignment length and block identity
#390 opened Aug 26, 2025 by AndreaGuarracino Loading…
Fix with faigz
#383 opened Aug 8, 2025 by ekg Loading…
Fix mapping truncation issue with nested taskflow subflows
#382 opened Aug 8, 2025 by ekg Loading…
Fix mapping truncation by flattening taskflow and using static thread-local readers
#381 opened Aug 7, 2025 by ekg Loading…
Add ANI estimation support for alignment-only mode
#380 opened Aug 5, 2025 by AndreaGuarracino Loading…
Implement work-stealing with subflows for mapping phase
#379 opened Aug 3, 2025 by ekg Loading…
Fix deadlock by using a dedicated executor for fragment batches
#378 opened Aug 1, 2025 by unavailable-2374 Loading…
fix stdout flush && high-concurrency
#376 opened Aug 1, 2025 by unavailable-2374 Loading…
2
update defaults for sketch density, block length, scaffolding
#368 opened Jul 6, 2025 by ekg Loading…
Avoid filtering all k-mers
#366 opened Jun 11, 2025 by AndreaGuarracino Loading…
modify -H parameter to set minimum hits floor with default 4
#359 opened May 8, 2025 by ekg Loading…
Flat index thin map
#358 opened May 6, 2025 by ekg Loading…
Refactor filterSubsetMappings to not merge if we don't want to merge
#357 opened May 5, 2025 by AndreaGuarracino Loading…
Reduce memory usage by clearing vectors as we go, also minor fixes
#356 opened May 2, 2025 by RedPenguin100 Loading…
4
Flat index
#355 opened May 1, 2025 by ekg Loading…
Add configurable chunk size for merging fragment mappings
#349 opened Apr 11, 2025 by ekg • Draft
Dynamic indicators
#337 opened Mar 26, 2025 by ekg • Draft
break if both fwd and rev alignments are not okay
#289 opened Oct 29, 2024 by ASLeonard • Draft
7
Use multiset jaccard
#278 opened Oct 4, 2024 by bkille • Draft
ProTip! What’s not been updated in a month: updated:<2025-10-03.