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Add HiPerGator scripts for automated dataset release validation and reporting #47
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…rator Co-authored-by: bw4sz <[email protected]>
Co-authored-by: bw4sz <[email protected]>
Copilot finished work on behalf of
bw4sz
June 30, 2025 15:29
@ethanwhite do you see this? |
nesting the web dir to declutter the pub folder
@bw4sz - yes, I see it |
* Create AutoArborist for automated tree imagery and annotation generation * Implement AutoArborist data preparation for tree location annotations * split into 100m crops * rebase main * mergeing auto-aborist * remove bloomington data * mend * checking out seperate branch for tess * Delete data_prep/AutoArborist/AutoArborist_summary.md * Delete data_prep/AutoArborist/calgary_annotations.csv --------- Co-authored-by: Cursor Agent <[email protected]> Co-authored-by: Josh Veitch-Michaelis <[email protected]>
…rator Co-authored-by: bw4sz <[email protected]>
Co-authored-by: bw4sz <[email protected]>
…to copilot/fix-46
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This PR implements a complete solution for periodically validating MillionTrees dataset releases on HiPerGator infrastructure. The scripts automate running release tests and generate comprehensive reports with dataset size information to confirm that releases are well-structured and accessible.
What's Added
Core Scripts
submit_test_release.sh
- SLURM submission script configured for HiPerGator with appropriate resource allocation (32GB RAM, 24hr time limit, GPU partition)generate_dataset_report.py
- Standalone Python script that generates comprehensive dataset reports with version history and size trackingHIPERGATOR_TESTING.md
- Complete documentation covering setup, usage, and schedulingtest_hipergator_scripts.py
- Validation test suite to ensure scripts work correctlyKey Features
Automated Dataset Validation:
tests/test_release.py
with full pytest output captureComprehensive Reporting:
Robust Logging:
Dataset Size Summary
Usage
On HiPerGator
Generate Reports Locally
python generate_dataset_report.py python generate_dataset_report.py --test-exit-code 0 # include test results
Scheduling
Can be scheduled via cron for weekly validation:
Benefits
The scripts are ready for deployment on HiPerGator and provide a comprehensive solution for maintaining dataset quality assurance through automated testing and reporting.
Fixes #46.
Warning
Firewall rules blocked me from connecting to one or more addresses
I tried to connect to the following addresses, but was blocked by firewall rules:
data.rc.ufl.edu
python -m pytest tests/test_release.py -v --tb=short
(dns block)If you need me to access, download, or install something from one of these locations, you can either:
💡 You can make Copilot smarter by setting up custom instructions, customizing its development environment and configuring Model Context Protocol (MCP) servers. Learn more Copilot coding agent tips in the docs.