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welch-lab

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  1. liger liger Public

    R package for integrating and analyzing multiple single-cell datasets

    R 408 80

  2. MultiVelo MultiVelo Public

    Multi-omic velocity inference

    Python 110 11

  3. VeloVAE VeloVAE Public

    Deep Generative Modeling of RNA Velocity

    Jupyter Notebook 36 6

  4. PerturbNet PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    Jupyter Notebook 32 10

  5. pyliger pyliger Public

    Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)

    Jupyter Notebook 30 6

  6. SquiggleNet SquiggleNet Public

    Python 20 5

Repositories

Showing 10 of 29 repositories
  • liger Public

    R package for integrating and analyzing multiple single-cell datasets

    welch-lab/liger’s past year of commit activity
    R 408 GPL-3.0 80 27 (2 issues need help) 11 Updated Apr 24, 2025
  • PerturbNet Public

    PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation

    welch-lab/PerturbNet’s past year of commit activity
    Jupyter Notebook 32 GPL-3.0 10 2 1 Updated Apr 24, 2025
  • libplanc Public Forked from ramkikannan/planc

    Distributed NMF/NTF Library

    welch-lab/libplanc’s past year of commit activity
    C++ 1 19 0 0 Updated Apr 23, 2025
  • RcppPlanc Public
    welch-lab/RcppPlanc’s past year of commit activity
    C++ 4 GPL-2.0 1 1 1 Updated Apr 23, 2025
  • CytoSimplex Public

    Simplex plot showing similarity between single-cells and clusters

    welch-lab/CytoSimplex’s past year of commit activity
    R 5 2 1 0 Updated Apr 23, 2025
  • welch-lab.github.io Public Forked from vittala23/welchlab

    Welch Lab

    welch-lab/welch-lab.github.io’s past year of commit activity
    HTML 1 1,241 0 0 Updated Apr 21, 2025
  • cytosignal Public
    welch-lab/cytosignal’s past year of commit activity
    R 17 1 2 0 Updated Apr 17, 2025
  • TopoVelo Public
    welch-lab/TopoVelo’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Apr 15, 2025
  • MultiVeloVAE Public
    welch-lab/MultiVeloVAE’s past year of commit activity
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Apr 14, 2025
  • pyCytoSimplex Public

    Create simplex plot showing similarity between single-cells and terminal clusters

    welch-lab/pyCytoSimplex’s past year of commit activity
    Python 4 GPL-3.0 0 0 0 Updated Mar 31, 2025

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