Added a fix to cell/trackOptiClist.m that prevents errors in the even…

…t that there are no cells in the first frame.
wiggins-lab · Aug 15, 2018 · 2c77421 · 2c77421 · Fouga · Aug 23, 2018
1 parent d40f2c5
commit 2c77421
Showing 1 changed file with 7 additions and 6 deletions.
diff --git a/cell/trackOptiClist.m b/cell/trackOptiClist.m
@@ -92,6 +92,11 @@
 
     prog  = [];
     prog0 = [];
+    prog_ = [];
+    gen_  = [];
+    gen0_ = [];
+
+
     % loop through all the images (*err.mat files)
     for i = 1:num_im
         data_c = loaderInternal([dirname,contents(i).name]);
@@ -191,7 +196,8 @@
 
             ind_tmp0 = (ID==0);
 
-            if i == 1
+
+            if isempty( gen_ )
                 prog =    ID;
                 gen0 =  0*ID;
                 gen  =  0*ID;
@@ -246,13 +252,8 @@
 
             IDmax = max(ID);
 
-            gen0_     = nan( [1,IDmax] );
             gen0_(ID(~ind_tmp0)) = gen0(~ind_tmp0);
-
-            gen_      = nan( [1,IDmax] );
             gen_(ID(~ind_tmp0))  = gen(~ind_tmp0);
-
-            prog_     = nan( [1,IDmax] );
             prog_(ID(~ind_tmp0)) = prog(~ind_tmp0);
             % done lineage stuff.