Update tsv, md and png files

actions-user · actions-user · commit 87d7cc413310 · 2025-12-13T03:27:32.000Z
diff --git a/_data/WP108-bibliography.tsv b/_data/WP108-bibliography.tsv
@@ -1 +1,2 @@
 ID	Database	Citation
+22440326	Pubmed	"Understanding selenoprotein function and regulation through the use of rodent models. Kasaikina MV, Hatfield DL, Gladyshev VN. Biochim Biophys Acta. 2012 Sep;1823(9):1633–42.  <a href=""http://www.ncbi.nlm.nih.gov/pubmed/22440326"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/22440326"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/22440326"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"
diff --git a/_data/WP108-datanodes.tsv b/_data/WP108-datanodes.tsv
@@ -31,11 +31,11 @@ Fos	GeneProduct	ncbigene:14281	""	ensembl:ENSMUSG00000021250	ncbigene:14281		uni
 SelI	GeneProduct	ncbigene:28042	""	ensembl:ENSMUSG00000075703	ncbigene:28042		uniprot:D6RE20;uniprot:Q8CET7;uniprot:Q80TA1								
 SEPP1	GeneProduct	ncbigene:20363	""	ensembl:ENSMUSG00000064373	ncbigene:20363		uniprot:P70274;uniprot:E0CX80;uniprot:E0CZ76;uniprot:E0CY03								
 Sep15	GeneProduct	ncbigene:9403	""												
-DIO2	GeneProduct	ncbigene:13371	""	ensembl:ENSMUSG00000007682	ncbigene:13371		uniprot:Q9Z1Y9								
+DIO2	GeneProduct	ncbigene:13371	""	ensembl:ENSMUSG00000007682	ncbigene:13371		uniprot:A0A8Z1S5Q0								
 SelH	GeneProduct	ncbigene:72657	""	ensembl:ENSMUSG00000076437	ncbigene:72657		uniprot:Q3UQA7;uniprot:A0A087WPM0;uniprot:A0A087WNU1								
 Sars	GeneProduct	ncbigene:20226	""	ensembl:ENSMUSG00000068739	ncbigene:20226		uniprot:P26638;uniprot:Q8C483;uniprot:A2AFS1;uniprot:A2AFS0								
 TXNRD1	GeneProduct	ncbigene:50493	""	ensembl:ENSMUSG00000020250	ncbigene:50493		uniprot:Q9JMH6;uniprot:A0A1W2P6U1								
-Sp1	GeneProduct	ncbigene:20683	""	ensembl:ENSMUSG00000001280	ncbigene:20683		uniprot:O89090;uniprot:G3X8Q0;uniprot:E9Q2V3;uniprot:E9Q0S7;uniprot:E9Q113								
+Sp1	GeneProduct	ncbigene:20683	""	ensembl:ENSMUSG00000001280	ncbigene:20683		uniprot:O89090;uniprot:G3X8Q0;uniprot:A0A979HLR9;uniprot:E9Q2V3;uniprot:E9Q0S7;uniprot:E9Q113								
 Sla	GeneProduct	ncbigene:211006	""	ensembl:ENSMUSG00000029173	ncbigene:211006		uniprot:D6RGM2;uniprot:F6ZFG8;uniprot:F6YLP3;uniprot:Q6P6M7								
 Sephs1	GeneProduct	ncbigene:109079	""	ensembl:ENSMUSG00000026662	ncbigene:109079		uniprot:Q8BH69								
 Crem	GeneProduct	ncbigene:12916	""	ensembl:ENSMUSG00000063889	ncbigene:12916		uniprot:D3Z011;uniprot:F6QKL8;uniprot:F6QWT6;uniprot:D3Z773;uniprot:D6RFR5;uniprot:D3Z0R0;uniprot:F6Q346;uniprot:D3Z6A5;uniprot:A0A0R4J1S0;uniprot:F6U9F5;uniprot:F6VJ22;uniprot:D3Z7P7;uniprot:D3YXV5;uniprot:D3YVP3;uniprot:Q9CQ87;uniprot:F6W4F5;uniprot:F6XRJ7;uniprot:P27699;uniprot:A0A0R4J1V7;uniprot:D3Z0B6;uniprot:Q3TTH6;uniprot:D3Z7M6;uniprot:D3Z4K8;uniprot:E9PV35;uniprot:E9PWV9;uniprot:F6RB97;uniprot:D6RG82;uniprot:D3Z2U7;uniprot:D3Z326								
diff --git a/_pathways/WP108.md b/_pathways/WP108.md
@@ -21,24 +21,24 @@ citedin:
 - link: PMC3885437
   title: A provisional gene regulatory atlas for mouse heart development (2014)
 communities: []
-description: ''
-last-edited: 2024-08-02
+description: Pathway describing the selenium metabolism and the related selenoproteins.
+last-edited: 2025-12-13
 ndex: null
 organisms:
 - Mus musculus
 redirect_from:
 - /index.php/Pathway:WP108
 - /instance/WP108
-- /instance/WP108_r135035
-revision: r135035
+- /instance/WP108_r142196
+revision: r142196
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP108.html
   '@type': Dataset
   creator:
     '@type': Organization
     name: WikiPathways
-  description: ''
+  description: Pathway describing the selenium metabolism and the related selenoproteins.
   keywords:
   - Crem
   - Cystathionine g-lyase
diff --git a/_pathways/WP5604.md b/_pathways/WP5604.md
@@ -1,31 +1,32 @@
 ---
 annotations:
-- id: CL:0000115
+- id: CL:0000233
   parent: native cell
   type: Cell Type Ontology
-  value: endothelial cell
+  value: platelet
 - id: CL:0000232
   parent: animal cell
   type: Cell Type Ontology
   value: erythrocyte
-- id: DOID:0081445
-  type: Disease Ontology
-- id: DOID:10923
-  parent: genetic disease
-  type: Disease Ontology
-  value: sickle cell anemia
 - id: CL:0000775
   parent: animal cell
   type: Cell Type Ontology
   value: neutrophil
-- id: CL:0000233
+- id: DOID:10923
+  parent: genetic disease
+  type: Disease Ontology
+  value: sickle cell anemia
+- id: DOID:0081445
+  type: Disease Ontology
+- id: CL:0000115
   parent: native cell
   type: Cell Type Ontology
-  value: platelet
+  value: endothelial cell
 authors:
 - Eweitz
 - Ash iyer
 - Egonw
+- Khanspers
 citedin: ''
 communities: []
 description: This pathway shows the molecular pathophysiology of sickle cell disease.    (A)
@@ -48,15 +49,15 @@ description: This pathway shows the molecular pathophysiology of sickle cell dis
   cells, leading to IL-1β release. Sterile inflammation then reinforces vaso-occlusion
   through a positive feedback loop that increases neutrophil, platelet, and endothelial
   adhesiveness.  Inspired by figure 1 in [Sundd 2018](https://pmc.ncbi.nlm.nih.gov/articles/PMC7053558/#S2).
-last-edited: 2025-11-17
+last-edited: 2025-12-13
 ndex: null
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP5604
 - /instance/WP5604
-- /instance/WP5604_r141502
-revision: r141502
+- /instance/WP5604_r142198
+revision: r142198
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP5604.html
diff --git a/_pathways/WP5609.md b/_pathways/WP5609.md
@@ -1,17 +1,17 @@
 ---
 annotations:
-- id: PW:0000025
-  parent: classic metabolic pathway
-  type: Pathway Ontology
-  value: glycolysis/gluconeogenesis pathway
 - id: PW:0000641
   parent: regulatory pathway
   type: Pathway Ontology
   value: gluconeogenesis pathway
-- id: PW:0000026
+- id: PW:0000640
   parent: classic metabolic pathway
   type: Pathway Ontology
-  value: citric acid cycle pathway
+  value: glycolysis pathway
+- id: PW:0000025
+  parent: classic metabolic pathway
+  type: Pathway Ontology
+  value: glycolysis/gluconeogenesis pathway
 - id: PW:0000262
   parent: classic metabolic pathway
   type: Pathway Ontology
@@ -20,24 +20,24 @@ annotations:
   parent: disease pathway
   type: Pathway Ontology
   value: melanoma pathway
-- id: PW:0000640
+- id: PW:0000026
   parent: classic metabolic pathway
   type: Pathway Ontology
-  value: glycolysis pathway
+  value: citric acid cycle pathway
 authors:
 - Khanspers
 citedin: ''
 communities: []
 description: draft
-last-edited: 2025-12-12
+last-edited: 2025-12-13
 ndex: null
 organisms:
 - Homo sapiens
 redirect_from:
 - /index.php/Pathway:WP5609
 - /instance/WP5609
-- /instance/WP5609_r142194
-revision: r142194
+- /instance/WP5609_r142197
+revision: r142197
 schema-jsonld:
 - '@context': https://schema.org/
   '@id': https://wikipathways.github.io/pathways/WP5609.html
diff --git a/assets/img/WP108/WP108-thumb.png b/assets/img/WP108/WP108-thumb.png
diff --git a/assets/img/WP5609/WP5609-thumb.png b/assets/img/WP5609/WP5609-thumb.png

Original file line number	Diff line number	Diff line change
`@@ -1 +1,2 @@`
`1`	`1`	`ID Database Citation`
	`2`	+22440326 Pubmed "Understanding selenoprotein function and regulation through the use of rodent models. Kasaikina MV, Hatfield DL, Gladyshev VN. Biochim Biophys Acta. 2012 Sep;1823(9):1633–42. <a href=""http://www.ncbi.nlm.nih.gov/pubmed/22440326"" target=""_blank"" class=""external"" rel=""nofollow"">PubMed</a> <a href=""https://europepmc.org/abstract/MED/22440326"" target=""_blank"" class=""external"" rel=""nofollow"">Europe PMC</a> <a href=""https://scholia.toolforge.org/pubmed/22440326"" target=""_blank"" class=""external"" rel=""nofollow"">Scholia</a>"