hydro: reservoir, reach lakes, style guide cleanup #2146
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- Add (integer) to &hydro_nlist: 0 [lakes off], 1 [level pool], or 2 [passthrough], or 3 [reservoir DA]
- turning lakes off (lake_option=0) will disable lakes even if
route_lake_f is supplied, or outlake is turned on.
- Reservoir DA will not be used unless lake_option=3, even if all
other required namelist options are present
- Reset lake_opt from 3 to 1 after setting DA flag
* Reservoir options have been moved from &hydro_nlist to
&reservoir_nlist
- This will make it easier to isolate / compose namelist files
- If lake_option is not equal to 3, &reservoir_nlist won't be read,
meaning it can be completely removed for applications that don't
need it
- Use reasonable lake_option default when not specified
- Update testing namelists
* Forcing variables names that have been added to namelist.hrldas
* Style guide cleanup
- Indentation and MPI capitalization
- Remove unneeded return statements
- Remove file header
- Tabs to spaces
* Reach Lakes Update
* NetCDF Update: move to modules and nf90 subroutines
|
The regression test results: |
|
Moving from draft to read-for-review. @rcabell I think as the other member of the Tested with coupled WRF|WRF-Hydro Front Range testcase
Attempted to build with |
rcabell
previously approved these changes
Jan 7, 2025
|
Added the single commit from WRF-Hydro PR#803 since it was a bugfix to the gridded lake option. Reran and compared output from a testrun of this PR and the develop branch and the results were the same. |
rcabell
approved these changes
Jan 9, 2025
|
Jenkins regression test results: |
dudhia
approved these changes
Jan 9, 2025
islas
approved these changes
Jan 14, 2025
There was a problem hiding this comment.
The vast majority of changes are whitespace, capitalization, or general clean up of code that does not affect overall logic.
Changes to support the lake options at first look major (e.g. LAKE_OPT = 2 is passthrough instead of the previous LAKE_OPT = 1) however these options were previously never exposed to runtime configuration control.
islas
added a commit
that referenced
this pull request
Apr 25, 2025
# WRF Version v4.7.0 The WRF model has been update to Version v4.7.0 on April 25, 2025 __Acknowledgements__: We would like to thank * Adam Dury (WeatherQuest) * Andrea Zonato, Royal Netherlands Meteorological Institute (KNMI) * Benjamin Kirk & Negin Sobhani (NSF NCAR / CISL) * Cenlin He @cenlinhe and Tzu-Shun Lin (NCAR) * Charlie Li, software developer from lakes environmental, Canada * Jakub Lewandowski (University of Leeds) * James Ruppert (University of Oklahoma) * Joseph Olson (NOAA/GSL) * Alexander Ukhov (KAUST) * L. Fita (UBA/CIMA/IFAECI) * Lukas Pilz (Heidelberg University) * Martilli, Alberto (CIEMAT) * Mathieu Landreau (Centrale Nantes) * Robert Conrick (U. of Washington); [email protected] * Robert Gilliam & Jon Pleim, US EPA * Sergey Osipov (KAUST) * Tanya Spero (U.S. EPA) * Ted Mansell (NOAA/NSSL) (@MicroTed ) for their contributions to this release. ## Physics * Fix an error associated with using LCZ categories in NoahMP. Prior to this fix, the LCZs were not correctly referenced, hence ignored in the NoahMP code. (#2202) [Details](a176a5965) * NSSL-mp bug fix for (obsolete) droplet nucleation (#2195) [Details](30c03dc40) * NSSL microphysics scheme updates include 1. An explicit rain breakup for 3-moment rain (addresses issue of cold pools being too warm and drops being too large in rain cores), 2. Improved reflectivity conservation for graupel->hail conversion and drop freezing, 3. More accurate saturation mixing ratio calculation, 4. New default droplet nucleation that controls excess supersaturation much better than previously (and default is to always predict the number of activated CCN). The update has been submitted to CCPP repository as well. (#2170) [Details](9d763af90) * An new microphysics, UFS Double Moment (UDM), 7-class microphysics from Songyou Hong is added (mp_physics=27). UDM mp largely adopts microphysical processes in WDM7, but with bug fixes or revisions based on literature and accumulated realism. UDM mp utilizes the in-cloud microphysics concept (Kim and Hong 2018), with the addition of water-friendly aerosols for CCN initialization. Semi-lagrangian sedimentation of Juang and Hong (2010) is also re-configured for computational efficiency and numerical accuracy. All production terms are optimized by introducing a cloud-top definition for hydrometeors. (#2147) [Details](5fc76c540) * Release of the RCON Microphysics package into WRF, which improves upon the warm rain representation of the Thompson-Eidhammer scheme. RCON is based heavily on the Thompson-Eidhammer scheme with a couple significant changes that improve upon the code in module_mp_rcon.F to generate more realistic rainfall during warm rain events with additional benefits for cold rain, especially warm processes during cold rain events. Among the most significant changes for rain productions are 1) the use of a wider cloud water DSD of lognormal shape instead of the gamma DSD used by the Thompson-Eidhammer parameterization and 2) enhancement of the cloud-to-rain autoconversion parameterization to accommodate the new shape. The changes here also allow for sedimentation of cloud water within the lowest model layer, which effectively creates a drizzle mode in the scheme. Accompanying published reference: Conrick, R., C. F. Mass, and L. McMurdie, 2023: Improving Simulations of Warm Rain in a Bulk Microphysics Scheme. Mon. Wea. Rev., 152, 169-185, https://doi.org/10.1175/MWR-D-23-0035.1. (#2144) [Details](de213c920) * Fix an erroneous print for using ghg_input when no radiation option is selected, mostly from idealized cases. (#2199) [Details](bd4ecbe01) * Fix a loop index error in bep_bem urban code. (#2196) [Details](0171299d3) * Noah-MP bug fixes for (1) allowing BATS snow albedo scheme for nighttime snow aging, (2) the potential leakage caused by calculate_soil variable during parallelized run, (3) the missing of HCPCT output for glacier points. (#2160) [Details](fd079bf48) * The similarity stability functions phim and phieps, necessary for calculating the surface values of tke and dissipation rate in the tke-epsilon-tpe PBL scheme [Zonato et al., 2022](https://doi.org/10.1175/MWR-D-21-0299.1) have been updated considering the correction term accounting for the roughness length z0. No relevant differences are found in temperature, wind speed, and humidity. Regarding turbulence variables, the stable case has just negligible differences, while the unstable case shows higher values of TKE and dissipation rate and lower values of temperature variance. (#2120) [Details](70855a73e) * Pleim-Xiu LSM is now compatible with 61 category MODIS LCZ landuse dataset. A mode of latent heat effects on Tg from vegetated parts and from wet leaves is added to Pleim-Xiu LSM. (#2023) [Details](b7f31dcde) ## Software * Determine MPI Data Types in col_on_comm() & dst_on_comm() to prevent displacements overflow. (#2157) [Details](af8101493) * CMake README documentation on <PackageName>_ROOT variables (#2190) [Details](33036d613) * CMake README documentation typo fixes (#2189) [Details](3fd1aefda) * Fix aarch64 GCC build when DM configuration selected (#2192) [Details](8e1d6742c) * Fixed failed compilation with Intel oneAPI by reworking the dependency linking of hydro CMake compilation (#2178) [Details](2e0694f14) * Fix compilation of grib2 IO in make build (#2191) [Details](2639dcd3f) * Fix uncontrollable building of external/io_netcdfpar folder for all stanzas (#2181) [Details](127a8f40a) * Suppress MYNN-EDMF verify checkout command (#2188) [Details](3f2465b41) * Fix typo in confcheck CMakeLists.txt for FSEEKO (#2179) [Details](2572bc5f5) * Add quotes to optimization flags exceptions in CMake (#2180) [Details](b15e341e4) * CMake Chem and Chem+KPP Build (#2018) [Details](b26e64595) * Consistent double precision definitions (#2099) [Details](704259871) * CMake Fix split command flags to be correctly populated (#2108) [Details](5b09725f5) * CMake WRFPLUS (#2089) [Details](695f455e8) * Override CMake-injected optimization flags in favor of the flags set by the build system and provided stanza information. (#2138) [Details](b6542b0f7) * Fixed CMake dev warning `project() should be called prior to this enable_language() call` appearing when using `configure_new` script with some newer versions of Cmake. (#2125) [Details](0ccba14eb) * Add documentation to custom properties in CMake to fix compatibility with older versions. (#2131) [Details](f204246a0) * Remove leading -D on defines during stanza reading to allow older versions of CMake to configure properly. (#2130) [Details](c2e121f56) * Bug fix in CMake FindnetCDF.cmake for empty --has-* nc-config fields (#2135) [Details](f096921b2) * CMake confcheck switch to try_* functions (#2090) [Details](5dd2c192d) * Bug fix in landread.c to address undefined behavior by adding an explicit return statement in `GET_LANDUSE()` function (#2197) [Details](5ef63ba34) * Fix memory leaks related to arrays being allocated without being deallocated in start_em and time series calculation subroutines. (#2139) [Details](94aa27a7e) * Fix an access violation error when a PGI compiler is used with urban variables in module_bl_ysu.F when urban option is turned off and the memories of those arrays are not available. (#2137) [Details](33ce70c0f) * Updated grav_settling code to better recognize the land use type so it doesn't crash. Also update the error message if it does crash to go into the rsl.error files rather than rsl.out files. (#2110) [Details](b3eebb3fe) * Bug fix for wrfinput where LCZ urban cells in LU_INDEX were overwritten with default USGS urban category. (#2153) [Details](d96478d4f) * Add manage_externals tool to access physics modules in MMM-physics git repository. (#2126) [Details](7195dc250) * Submodule implementation of the MYNN-EDMF (https://github.com/NCAR/MYNN-EDMF). The module names changed from *_mynn_* to *_mynnedmf_* to resolve a version conflict in MPAS. This version was originally developed within FV3/CCPP for RRFSv1, but has been refactored (to a k-only scheme) resulting in a speed-up of about 10-15% and it has since been tuned to better perform in MPAS and WRF compared to previous versions which were primarily developed for use in FV3. (#2148) [Details](383476531) * When the namelist option write_hist_at_0h_rst is set to .true. under &time_control, history write-out will now be conducted for the first time step for both the 0th stream (wrfout* files) and any special user-defined streams being implemented. (#2133) [Details](61d1c84cb) ## Dynamics * Corrected algorithms in the tipping bucket for precipitation and in the nudging routines to adjust for imprecision in single-precision real numbers exceeding the resolvable values in long (>23-year) continuous simulations. (#2063) [Details](a32188308) ## Data Assimilation * This PR adds an incremental analysis update capability. In the DA code, code is added to write out analysis increments for all variables in WRF netCDF format using auxiliary history output stream #5. In the model, analysis increments are divided by the number of time steps in a specified time window and added to the model similar to physics tendencies. The input stream for the model is 15. The capability is turned on by adding iau = 1 and iau_time_window_sec in &time_control. The way the increments are added to the model is similar to what described by the paper by Chen et al. (https://doi-org.cuucar.idm.oclc.org/10.1175/WAF-D-22-0127.1). (#2151) [Details](6741f010e) ## Chemistry * Bug fix in the calculation of optical properties. Mass redistribution between GOCART dust/sea salt and MOZAIC bins was corrected. It slightly increased (by 3-5%) the aerosol optical depth (AOD). (#2112) [Details](bb791e73d) * Fix a bug where TUV and FTUV fail to initialize the distance to the Sun properly if the simulation starts on 1 Jan. (#2171) [Details](9aa3979f0) ## Hydro * In `hydro.namelist` adding lake_opt to namelist, reservoirs to own namelist. Support for lakes (reservoirs) in non-UDMP reach-based routing added and some style guide cleanup completed. (#2146) [Details](6d1db68f6) * Hydro reservoir drainage area (DA) lake option bugfix (#2182) [Details](313834d41) ## Miscellaneous * Update README.namelist file (#2193) [Details](7053a6ae9) * A namelist option, default_soiltype, is added to define filled-in land category along water/land boundaries where soil data may be missing in program real. (#2166) [Details](2f68d7b70) * Add dzstretch_u and dzbot in namelist.input. Users are advised to check UG for other parameters to use. (#2165) [Details](89ba5181b) * Noah-MP code tag is updated to corresponding to WRFV4.7 release. (#2207) [Details](f11e38164) * Fixed defs for adap time step namelist vars in README.namelist (#2158) [Details](30a16a1ce)
islas
added a commit
that referenced
this pull request
Apr 25, 2025
# WRF Version v4.7.0 The WRF model has been update to Version v4.7.0 on April 25, 2025 __Acknowledgements__: We would like to thank * Adam Dury (WeatherQuest) * Andrea Zonato, Royal Netherlands Meteorological Institute (KNMI) * Benjamin Kirk & Negin Sobhani (NSF NCAR / CISL) * Cenlin He @cenlinhe and Tzu-Shun Lin (NCAR) * Charlie Li, software developer from lakes environmental, Canada * Jakub Lewandowski (University of Leeds) * James Ruppert (University of Oklahoma) * Joseph Olson (NOAA/GSL) * Alexander Ukhov (KAUST) * L. Fita (UBA/CIMA/IFAECI) * Lukas Pilz (Heidelberg University) * Martilli, Alberto (CIEMAT) * Mathieu Landreau (Centrale Nantes) * Robert Conrick (U. of Washington); [email protected] * Robert Gilliam & Jon Pleim, US EPA * Sergey Osipov (KAUST) * Tanya Spero (U.S. EPA) * Ted Mansell (NOAA/NSSL) (@MicroTed ) for their contributions to this release. ## Physics * Fix an error associated with using LCZ categories in NoahMP. Prior to this fix, the LCZs were not correctly referenced, hence ignored in the NoahMP code. (#2202) [Details](a176a5965) * NSSL-mp bug fix for (obsolete) droplet nucleation (#2195) [Details](30c03dc40) * NSSL microphysics scheme updates include 1. An explicit rain breakup for 3-moment rain (addresses issue of cold pools being too warm and drops being too large in rain cores), 2. Improved reflectivity conservation for graupel->hail conversion and drop freezing, 3. More accurate saturation mixing ratio calculation, 4. New default droplet nucleation that controls excess supersaturation much better than previously (and default is to always predict the number of activated CCN). The update has been submitted to CCPP repository as well. (#2170) [Details](9d763af90) * An new microphysics, UFS Double Moment (UDM), 7-class microphysics from Songyou Hong is added (mp_physics=27). UDM mp largely adopts microphysical processes in WDM7, but with bug fixes or revisions based on literature and accumulated realism. UDM mp utilizes the in-cloud microphysics concept (Kim and Hong 2018), with the addition of water-friendly aerosols for CCN initialization. Semi-lagrangian sedimentation of Juang and Hong (2010) is also re-configured for computational efficiency and numerical accuracy. All production terms are optimized by introducing a cloud-top definition for hydrometeors. (#2147) [Details](5fc76c540) * Release of the RCON Microphysics package into WRF, which improves upon the warm rain representation of the Thompson-Eidhammer scheme. RCON is based heavily on the Thompson-Eidhammer scheme with a couple significant changes that improve upon the code in module_mp_rcon.F to generate more realistic rainfall during warm rain events with additional benefits for cold rain, especially warm processes during cold rain events. Among the most significant changes for rain productions are 1) the use of a wider cloud water DSD of lognormal shape instead of the gamma DSD used by the Thompson-Eidhammer parameterization and 2) enhancement of the cloud-to-rain autoconversion parameterization to accommodate the new shape. The changes here also allow for sedimentation of cloud water within the lowest model layer, which effectively creates a drizzle mode in the scheme. Accompanying published reference: Conrick, R., C. F. Mass, and L. McMurdie, 2023: Improving Simulations of Warm Rain in a Bulk Microphysics Scheme. Mon. Wea. Rev., 152, 169-185, https://doi.org/10.1175/MWR-D-23-0035.1. (#2144) [Details](de213c920) * Fix an erroneous print for using ghg_input when no radiation option is selected, mostly from idealized cases. (#2199) [Details](bd4ecbe01) * Fix a loop index error in bep_bem urban code. (#2196) [Details](0171299d3) * Noah-MP bug fixes for (1) allowing BATS snow albedo scheme for nighttime snow aging, (2) the potential leakage caused by calculate_soil variable during parallelized run, (3) the missing of HCPCT output for glacier points. (#2160) [Details](fd079bf48) * The similarity stability functions phim and phieps, necessary for calculating the surface values of tke and dissipation rate in the tke-epsilon-tpe PBL scheme [Zonato et al., 2022](https://doi.org/10.1175/MWR-D-21-0299.1) have been updated considering the correction term accounting for the roughness length z0. No relevant differences are found in temperature, wind speed, and humidity. Regarding turbulence variables, the stable case has just negligible differences, while the unstable case shows higher values of TKE and dissipation rate and lower values of temperature variance. (#2120) [Details](70855a73e) * Pleim-Xiu LSM is now compatible with 61 category MODIS LCZ landuse dataset. A mode of latent heat effects on Tg from vegetated parts and from wet leaves is added to Pleim-Xiu LSM. (#2023) [Details](b7f31dcde) ## Software * Determine MPI Data Types in col_on_comm() & dst_on_comm() to prevent displacements overflow. (#2157) [Details](af8101493) * CMake README documentation on <PackageName>_ROOT variables (#2190) [Details](33036d613) * CMake README documentation typo fixes (#2189) [Details](3fd1aefda) * Fix aarch64 GCC build when DM configuration selected (#2192) [Details](8e1d6742c) * Fixed failed compilation with Intel oneAPI by reworking the dependency linking of hydro CMake compilation (#2178) [Details](2e0694f14) * Fix compilation of grib2 IO in make build (#2191) [Details](2639dcd3f) * Fix uncontrollable building of external/io_netcdfpar folder for all stanzas (#2181) [Details](127a8f40a) * Suppress MYNN-EDMF verify checkout command (#2188) [Details](3f2465b41) * Fix typo in confcheck CMakeLists.txt for FSEEKO (#2179) [Details](2572bc5f5) * Add quotes to optimization flags exceptions in CMake (#2180) [Details](b15e341e4) * CMake Chem and Chem+KPP Build (#2018) [Details](b26e64595) * Consistent double precision definitions (#2099) [Details](704259871) * CMake Fix split command flags to be correctly populated (#2108) [Details](5b09725f5) * CMake WRFPLUS (#2089) [Details](695f455e8) * Override CMake-injected optimization flags in favor of the flags set by the build system and provided stanza information. (#2138) [Details](b6542b0f7) * Fixed CMake dev warning `project() should be called prior to this enable_language() call` appearing when using `configure_new` script with some newer versions of Cmake. (#2125) [Details](0ccba14eb) * Add documentation to custom properties in CMake to fix compatibility with older versions. (#2131) [Details](f204246a0) * Remove leading -D on defines during stanza reading to allow older versions of CMake to configure properly. (#2130) [Details](c2e121f56) * Bug fix in CMake FindnetCDF.cmake for empty --has-* nc-config fields (#2135) [Details](f096921b2) * CMake confcheck switch to try_* functions (#2090) [Details](5dd2c192d) * Bug fix in landread.c to address undefined behavior by adding an explicit return statement in `GET_LANDUSE()` function (#2197) [Details](5ef63ba34) * Fix memory leaks related to arrays being allocated without being deallocated in start_em and time series calculation subroutines. (#2139) [Details](94aa27a7e) * Fix an access violation error when a PGI compiler is used with urban variables in module_bl_ysu.F when urban option is turned off and the memories of those arrays are not available. (#2137) [Details](33ce70c0f) * Updated grav_settling code to better recognize the land use type so it doesn't crash. Also update the error message if it does crash to go into the rsl.error files rather than rsl.out files. (#2110) [Details](b3eebb3fe) * Bug fix for wrfinput where LCZ urban cells in LU_INDEX were overwritten with default USGS urban category. (#2153) [Details](d96478d4f) * Add manage_externals tool to access physics modules in MMM-physics git repository. (#2126) [Details](7195dc250) * Submodule implementation of the MYNN-EDMF (https://github.com/NCAR/MYNN-EDMF). The module names changed from *_mynn_* to *_mynnedmf_* to resolve a version conflict in MPAS. This version was originally developed within FV3/CCPP for RRFSv1, but has been refactored (to a k-only scheme) resulting in a speed-up of about 10-15% and it has since been tuned to better perform in MPAS and WRF compared to previous versions which were primarily developed for use in FV3. (#2148) [Details](383476531) * When the namelist option write_hist_at_0h_rst is set to .true. under &time_control, history write-out will now be conducted for the first time step for both the 0th stream (wrfout* files) and any special user-defined streams being implemented. (#2133) [Details](61d1c84cb) ## Dynamics * Corrected algorithms in the tipping bucket for precipitation and in the nudging routines to adjust for imprecision in single-precision real numbers exceeding the resolvable values in long (>23-year) continuous simulations. (#2063) [Details](a32188308) ## Data Assimilation * This PR adds an incremental analysis update capability. In the DA code, code is added to write out analysis increments for all variables in WRF netCDF format using auxiliary history output stream #5. In the model, analysis increments are divided by the number of time steps in a specified time window and added to the model similar to physics tendencies. The input stream for the model is 15. The capability is turned on by adding iau = 1 and iau_time_window_sec in &time_control. The way the increments are added to the model is similar to what described by the paper by Chen et al. (https://doi-org.cuucar.idm.oclc.org/10.1175/WAF-D-22-0127.1). (#2151) [Details](6741f010e) ## Chemistry * Bug fix in the calculation of optical properties. Mass redistribution between GOCART dust/sea salt and MOZAIC bins was corrected. It slightly increased (by 3-5%) the aerosol optical depth (AOD). (#2112) [Details](bb791e73d) * Fix a bug where TUV and FTUV fail to initialize the distance to the Sun properly if the simulation starts on 1 Jan. (#2171) [Details](9aa3979f0) ## Hydro * In `hydro.namelist` adding lake_opt to namelist, reservoirs to own namelist. Support for lakes (reservoirs) in non-UDMP reach-based routing added and some style guide cleanup completed. (#2146) [Details](6d1db68f6) * Hydro reservoir drainage area (DA) lake option bugfix (#2182) [Details](313834d41) ## Miscellaneous * Update README.namelist file (#2193) [Details](7053a6ae9) * A namelist option, default_soiltype, is added to define filled-in land category along water/land boundaries where soil data may be missing in program real. (#2166) [Details](2f68d7b70) * Add dzstretch_u and dzbot in namelist.input. Users are advised to check UG for other parameters to use. (#2165) [Details](89ba5181b) * Noah-MP code tag is updated to corresponding to WRFV4.7 release. (#2207) [Details](f11e38164) * Fixed defs for adap time step namelist vars in README.namelist (#2158) [Details](30a16a1ce)
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TYPE: new feature, enhancement
KEYWORDS: hydro, reservoir, reach lakes, namelist style guide
SOURCE: Soren Rasmussen and Ryan Cabell, NSF NCAR, internal
DESCRIPTION OF CHANGES:
Add lake_opt to namelist, reservoirs to own nlist
Add (integer) to &hydro_nlist: 0 [lakes off], 1 [level pool], or 2 [passthrough], or 3 [reservoir DA]
turning lakes off (lake_option=0) will disable lakes even if
route_lake_f is supplied, or outlake is turned on.
Reservoir DA will not be used unless lake_option=3, even if all
other required namelist options are present
Reset lake_opt from 3 to 1 after setting DA flag
Reservoir options have been moved from &hydro_nlist to
&reservoir_nlist
This will make it easier to isolate / compose namelist files
If lake_option is not equal to 3, &reservoir_nlist won't be read,
meaning it can be completely removed for applications that don't
need it
Use reasonable lake_option default when not specified
Update testing namelists
Forcing variables names that have been added to namelist.hrldas
Reach Lakes: support for lakes (reservoirs) in non-UDMP reach-based routing, restoring functionality that was in WRF-Hydro version 5.1.1
Style guide cleanup
Problem: WRF-Hydro developments need to be ported over for future release
LIST OF MODIFIED FILES:
TESTS CONDUCTED:
RELEASE NOTE:
hydro updates: In
hydro.namelistadding lake_opt to namelist, reservoirs to own namelist. Support for lakes (reservoirs) in non-UDMP reach-based routing added and some style guide cleanup completed.