In which we actually name reports from each suite differently... #37
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| # Run the old Travis tests within GitHub Actions, and upload the CodeClimate Report | |
| # | |
| # If nektos/act is installed as a GitHub CLI extension... | |
| # https://github.com/nektos/act#installation-as-github-cli-extension | |
| # ...then run this locally with: | |
| # gh act -j test | |
| # Appending to $PATH: https://www.scivision.dev/github-actions-path-append/ | |
| # Conditionals predicated on status-codes: | |
| # https://github.com/orgs/community/discussions/25809 | |
| # | |
| # One can *try* action-validator, but there are false-negatives: | |
| # (https://github.com/mpalmer/action-validator | |
| # | |
| # State does *not* persist between jobs... | |
| # https://github.com/actions/checkout/issues/19 | |
| # ...so all this needs to happen in a single job. | |
| # | |
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - actions-grg | |
| pull_request: | |
| branches: | |
| - actions-grg | |
| env: | |
| CC_TEST_REPORTER_ID: ec48bb03c72db6b43ce71fd488110b4707abfde4386c144d886d711378d8db64 | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Get BLAST | |
| working-directory: /opt | |
| run: wget -c "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.12.0/ncbi-blast-2.12.0+-x64-linux.tar.gz" && tar xvf ncbi-blast-*.tar.gz | |
| - name: BLAST PATH | |
| run: mkdir /opt/bin && echo "/opt/bin:/opt/ncbi-blast-2.12.0+/bin" >> $GITHUB_PATH | |
| - name: Get CodeClimate | |
| working-directory: /opt | |
| run: wget -c "https://codeclimate.com/downloads/test-reporter/test-reporter-latest-linux-amd64" -O bin/cc-test-reporter && chmod +x bin/cc-test-reporter | |
| - name: Instal Jest | |
| run: npm install --save-dev jest | |
| - name: Set up Ruby | |
| uses: ruby/setup-ruby@v1 | |
| with: | |
| ruby-version: '3.2' | |
| bundler-cache: true | |
| - name: Install dependencies | |
| run: bundle install | |
| - name: Create SequenceServer config file | |
| run: bundle exec bin/sequenceserver -s -d spec/database/v5/sample | |
| - name: CodeClimate before-build hook | |
| run: cc-test-reporter before-build | |
| - name: Run main specs and import spec for BLAST 2.9.0+ | |
| continue-on-error: true | |
| run: bundle exec rspec spec/*_spec.rb spec/blast_versions/blast_2.9.0/* | |
| - name: format-coverage (Rspec) | |
| run: cc-test-reporter format-coverage --output coverage/codeclimate_rspec.json | |
| - name: Jest tests | |
| run: npm test -- --coverage | |
| continue-on-error: true | |
| - name: format-coverage (Jest) | |
| run: cc-test-reporter format-coverage coverage/lcov.info --input-type lcov --output coverage/codeclimate_jest.json | |
| - name: sum-coverage | |
| run: cc-test-reporter sum-coverage --parts 2 coverage/codeclimate_*.json | |
| - name: upload coverage to code-CodeClimate | |
| run: cc-test-reporter upload-coverage | |
| - name: upload code coverage results to action | |
| uses: actions/upload-artifact@v3 | |
| if: success() || failure() | |
| with: | |
| name: code-coverage-report | |
| path: coverage |