"SampleFT" and "MaxDepth" are not defined in the header

[rain-zjg]

Hello, OctopuSV team,
Lately, I corrected and merged SVs across three callers (Manta, Delly, Smoove) using OctopuSV. When I sorted the merged VCF file using bcftools, I came across errors like:

[W::vcf_parse_filter] FILTER 'SampleFT' is not defined in the header
Error encountered while parsing the input at chr7:11245220
Cleaning
Writing to /tmp/bcftools.qTaXzV
[W::vcf_parse_filter] FILTER 'MaxDepth' is not defined in the header
Error encountered while parsing the input at chr1:165536641
Cleaning

Then I checked the merged VCF file generated by OctopuSV, and I found that these two filter tags were not defined in the header. What are the meanings of "SampleFT" and "MaxDepth"? Why were they not defined in the header?

Looking forward to your reply, thanks a lot!
Rain

[qingxiangguo]

Hi Rain, Thanks for using OctopuSV! Current is beta version and we are about to release a new version that will address most of the issues including this one. Best Allen

…

________________________________ From: rain-zjg ***@***.***> Sent: Tuesday, July 22, 2025 8:42:47 PM To: ylab-hi/OctopuSV ***@***.***> Cc: Subscribed ***@***.***> Subject: [ylab-hi/OctopuSV] "SampleFT" and "MaxDepth" are not defined in the header (Issue #136) [https://avatars.githubusercontent.com/u/73052809?s=20&v=4]rain-zjg created an issue (ylab-hi/OctopuSV#136)<#136> Hello, OctopuSV team, Lately, I corrected and merged SVs across three callers (Manta, Delly, Smoove) using OctopuSV. When I sorted the merged VCF file using bcftools, I came across errors like: [W::vcf_parse_filter] FILTER 'SampleFT' is not defined in the header Error encountered while parsing the input at chr7:11245220 Cleaning Writing to /tmp/bcftools.qTaXzV [W::vcf_parse_filter] FILTER 'MaxDepth' is not defined in the header Error encountered while parsing the input at chr1:165536641 Cleaning Then I checked the merged VCF file generated by OctopuSV, and I found that these two filter tags were not defined in the header. What are the meanings of "SampleFT" and "MaxDepth"? Why were they not defined in the header? Looking forward to your reply, thanks a lot! Rain ― Reply to this email directly, view it on GitHub<#136>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AE65QBBXOBKDW6RP6WLN3ED3J3SBPAVCNFSM6AAAAACCEN7R7WVHI2DSMVQWIX3LMV43ASLTON2WKOZTGI2TINJUHAYTANY>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[rain-zjg]

Hi Rain,

Thanks for using OctopuSV!

Current is beta version and we are about to release a new version that will address most of the issues including this one.

Best

Allen
…

Could you tell me approximately when it will be released？I’m currently involved in a related project and need this issue fixed quickly.

[qingxiangguo]

I will say within one month. Get Outlook for iOS<https://aka.ms/o0ukef>

…

________________________________ From: rain-zjg ***@***.***> Sent: Tuesday, July 22, 2025 9:08:35 PM To: ylab-hi/OctopuSV ***@***.***> Cc: Qingxiang (Allen) Guo ***@***.***>; Comment ***@***.***> Subject: Re: [ylab-hi/OctopuSV] "SampleFT" and "MaxDepth" are not defined in the header (Issue #136) [https://avatars.githubusercontent.com/u/73052809?s=20&v=4]rain-zjg left a comment (ylab-hi/OctopuSV#136)<#136 (comment)> Hi Rain, Thanks for using OctopuSV! Current is beta version and we are about to release a new version that will address most of the issues including this one. Best Allen … Could you tell me approximately when it will be released？I’m currently involved in a related project and need this issue fixed quickly. ― Reply to this email directly, view it on GitHub<#136 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AE65QBARFYHMZAM2ALGJ6H33J3VCHAVCNFSM6AAAAACCEN7R7WVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZTCMBVGM4DONJSGA>. You are receiving this because you commented.Message ID: ***@***.***>