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YangLab@Northwestern

This repo stores the codes for Yang lab projects

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  1. ScanNeo ScanNeo Public

    A pipeline for identifying indel derived neoantigens using RNA-Seq data

    Python 30 7

  2. pxblat pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    C 17

  3. ScanNeo2 ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    Python 14 1

  4. ScanExitron ScanExitron Public

    A computational workflow for exitron splicing identification

    Shell 12 6

  5. ScanITD ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    Python 11 3

  6. OctopuSV OctopuSV Public

    Efficient merging of structural variants from multiple SV callers

    Python 10

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