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YangLab@Northwestern

This repo stores the codes for Yang lab projects

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  1. ScanNeo ScanNeo Public

    A pipeline for identifying indel derived neoantigens using RNA-Seq data

    Python 29 7

  2. pxblat pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    C 17

  3. ScanExitron ScanExitron Public

    A computational workflow for exitron splicing identification

    Shell 13 6

  4. ScanNeo2 ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    Python 12 1

  5. ScanITD ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    Python 11 3

  6. ScanExitronLR ScanExitronLR Public

    A package for the characterization and quantification of exitron splicing events in long-read RNA-seq

    Python 6

Repositories

Showing 10 of 16 repositories
  • segmeter Public

    Framework designed for evaluating the performance of genomic interval query tools

    ylab-hi/segmeter’s past year of commit activity
    Python 0 0 0 0 Updated Dec 25, 2024
  • yanglab-guide Public

    The repo contain content about yang's lab guide.

    ylab-hi/yanglab-guide’s past year of commit activity
    Python 2 MIT 2 0 31 Updated Dec 25, 2024
  • DeepChopper Public

    Language models identify chimeric artificial reads in NanoPore direct-RNA sequencing data.

    ylab-hi/DeepChopper’s past year of commit activity
    Rust 4 Apache-2.0 0 0 3 Updated Dec 23, 2024
  • pxblat Public

    PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

    ylab-hi/pxblat’s past year of commit activity
    C 17 0 1 4 Updated Dec 23, 2024
  • genogrove Public

    C++ Genomic Interval B+ Tree Library

    ylab-hi/genogrove’s past year of commit activity
    C++ 3 GPL-3.0 0 0 1 Updated Nov 23, 2024
  • ScanITD Public

    A python tool to detect internal tandem duplication with robust variant allele frequency estimation

    ylab-hi/ScanITD’s past year of commit activity
    Python 11 MIT 3 1 0 Updated Nov 20, 2024
  • ScanNeo2 Public

    Snakemake-based computational workflow for neoantigen prediction from diverse sources

    ylab-hi/ScanNeo2’s past year of commit activity
    Python 12 MIT 1 9 0 Updated Sep 2, 2024
  • ScanExitron Public

    A computational workflow for exitron splicing identification

    ylab-hi/ScanExitron’s past year of commit activity
    Shell 13 MIT 6 0 0 Updated Aug 30, 2024
  • ylab-hi.github.io Public

    Official website for Yang Lab

    ylab-hi/ylab-hi.github.io’s past year of commit activity
    SCSS 0 0 0 0 Updated Aug 3, 2024
  • docker-images Public

    docker-images

    ylab-hi/docker-images’s past year of commit activity
    Dockerfile 1 MIT 0 0 0 Updated Apr 24, 2024

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