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Can ScanNeo2 analyze only RNA-seq data?

Status: Open.

#50 In ylab-hi/ScanNeo2;

· chengzwhendy opened on Apr 1, 2025

Add HERV as (potential) new source of neoantigens

Status: Open.

Feature

#47 In ylab-hi/ScanNeo2;

· riasc opened on Mar 27, 2025

Add support for peptide sequences as input that can be prioritized

Status: Open.

Feature

#46 In ylab-hi/ScanNeo2;

· riasc opened on Mar 27, 2025

MissingInputException in rule filter_reads_mhcII_SE

Status: Open.

#43 In ylab-hi/ScanNeo2;

· rashidma opened on Mar 12, 2025

How can I fix config file when I only have DNA data?

Status: Open.

#42 In ylab-hi/ScanNeo2;

· Donbbit opened on Feb 13, 2025

ValueError: not enough values to unpack (expected 2, got 1)

Status: Open.

#41 In ylab-hi/ScanNeo2;

· Donbbit opened on Dec 20, 2024

VEP error

Status: Open.

#38 In ylab-hi/ScanNeo2;

· androidpifu opened on Sep 8, 2024

Prevent trigger that re-runs certain rules (/tmp)

Status: Open.

#31 In ylab-hi/ScanNeo2;

· riasc opened on Jul 9, 2024

Extracting RG for DNAseq data when input is BAM required

Status: Open.

#29 In ylab-hi/ScanNeo2;

· riasc opened on Jun 21, 2024

cleave peptide for fusion gene

Status: Open.

#25 In ylab-hi/ScanNeo2;

· nttg8100 opened on Jun 4, 2024

Add routine to catch missing input data on filesystem

Status: Open.

#14 In ylab-hi/ScanNeo2;

· riasc opened on Mar 9, 2024

MHC-I genotyping on Split BAMs

Status: Open.

#4 In ylab-hi/ScanNeo2;

· riasc opened on Jan 14, 2024