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How to generate the MHC-II neoantigens only from RNA_seq paired-ends data?

Status: Open.

#54 In ylab-hi/ScanNeo2;

· jimmywong19990808-source opened on Oct 27, 2025

Add HERV as (potential) new source of neoantigens

Status: Open.

Feature

#47 In ylab-hi/ScanNeo2;

· riasc opened on Mar 27, 2025

Add support for peptide sequences as input that can be prioritized

Status: Open.

Feature

#46 In ylab-hi/ScanNeo2;

· riasc opened on Mar 27, 2025

VEP error

Status: Open.

#38 In ylab-hi/ScanNeo2;

· androidpifu opened on Sep 8, 2024

Prevent trigger that re-runs certain rules (/tmp)

Status: Open.

#31 In ylab-hi/ScanNeo2;

· riasc opened on Jul 9, 2024

Extracting RG for DNAseq data when input is BAM required

Status: Open.

#29 In ylab-hi/ScanNeo2;

· riasc opened on Jun 21, 2024

cleave peptide for fusion gene

Status: Open.

#25 In ylab-hi/ScanNeo2;

· nttg8100 opened on Jun 4, 2024

Add routine to catch missing input data on filesystem

Status: Open.

#14 In ylab-hi/ScanNeo2;

· riasc opened on Mar 9, 2024