GitHub - zunderlab/VanDeusen-et-al.-CNS-Development-Manuscript: R and Python script used to analyze and visualize data presented in Van Deusen, et al.

zunderlab / VanDeusen-et-al.-CNS-Development-Manuscript Public

Notifications You must be signed in to change notification settings
Fork 0
Star 3

R and Python script used to analyze and visualize data presented in Van Deusen, et al.

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 28 Commits
01_Data_Preprocessing		01_Data_Preprocessing
02_UMAP_and_Leiden_Clustering		02_UMAP_and_Leiden_Clustering
03_Protein_RNA_Comparison		03_Protein_RNA_Comparison
04_URD		04_URD
05_Figure_Outputs		05_Figure_Outputs
ReadMe.txt		ReadMe.txt

Repository files navigation

This directory contains scripts used to analyze and visualize data for Van Deusen, et al. 

01_Data_Preprocessing: Scripts to pre-process mass cytometry data for quality control

02_UMAP_and_Leiden_Clustering: Scripts for dimensionality reduction and clustering analyses

03_Protein_RNA_Comparison: Scripts for comparison of mass cytometry with scRNA-seq and in situ 
hybridization data from the Allen Institute Developing Mouse Brain Atlas

04_URD: Scripts to perform pseudotime-based trajectory analyses of mass cytometry data with URD

05_Figure_Outputs: Scripts used to generate visual outputs presented in figures. 

Please note that figure panels without designated scripts were generated using Adobe Illustrator and BioRender (https://biorender.com), or were automated outputs of the URD R package (Extended Data Figures 7a-d, 8g-j).