Soil health indicator variability and management sensitivity across soils, bioregions, and production systems.

This repo contains the R code and most data needed reproduce analyses generate tables and figures from Dynarski, K.A.; Adeleke, E.; Baumhardt, R.L.; Burke, J.; Carter, T.; DeLaune, P.; Gan, H.; Grossman, J.; Heitman, J.; Kandanool, D.; Lewis, K.; Naasko, K.; O'Kelley, R.; Osmond, D.; Perrone, S.; Prsley, D.; Racelis, A.; Tao, H.; Tomlinson, P.; Starr, L.; Ugarte, C.; Veum, K.S.; Williams, C.; Wills, S.A. Soil health indicator variability and management sensitivity across soils, bioregions, and agricultural systems. In revision at Agriculture, Ecosystems & Environment (2025).

To run the code, you will also need to download the DSP4SH v.1.0 database (https://doi.org/10.15482/USDA.ADC/25122323.v1) and save in the /data_raw folder.

• To clean data and generate data files for downstream analysis, run code/data_compilation_meta.R
• To run analyses and generate tables and figures displayed in the manuscript, run code/dsp4sh_indicator_analysis.Rmd
• To view report with tables and figures from manuscript, open code/dsp4sh_indicator_analysis.md