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    24 repositories

    • SpekCheck

      Public
      Calculate the spectral transmission of a dichroic/filter series
      JavaScript
      •
      GNU General Public License v3.0
      •4•3•19•0•Updated Jun 17, 2025Jun 17, 2025

    • RedPitaya-DSP

      Public
      ActionTable runner for the Red Pitaya.
      C
      •6•2•5•1•Updated May 23, 2025May 23, 2025

    • microscope

      Public
      Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.
      Python
      •
      GNU General Public License v3.0
      •42•1•0•0•Updated Jan 12, 2023Jan 12, 2023

    • coffee-club

      Public
      Python
      •0•0•1•0•Updated Jul 21, 2021Jul 21, 2021

    • configs

      Public
      Micron configs
      Python
      •1•0•0•0•Updated Jun 25, 2021Jun 25, 2021

    • scripts

      Public
      Collection of scripts developed at Micron.
      Python
      •6•1•1•1•Updated Jun 5, 2021Jun 5, 2021

    • microscope-aotools

      Public
      microscope addon for adaptive optics
      Python
      •
      GNU General Public License v3.0
      •10•6•10•0•Updated May 27, 2021May 27, 2021

    • BeamDelta

      Public
      Alignment tool
      Python
      •
      GNU General Public License v3.0
      •7•6•7•0•Updated May 20, 2021May 20, 2021

    • SIMcheck

      Public
      SIMcheck: ImageJ tools for assessing Structured Illumination Microscopy (SIM) data quality and reliability
      Java
      •
      GNU General Public License v3.0
      •5•29•6•0•Updated Jan 27, 2021Jan 27, 2021

    • SIMcheck_Manual

      Public
      Python
      •2•1•0•0•Updated Jan 27, 2021Jan 27, 2021

    • SIMcheck-update-site

      Public
      ImageJ update site for the SIMcheck plugin.
      0•0•0•0•Updated Jan 22, 2021Jan 22, 2021

    • microscopi

      Public
      Initial software for the 'microscoPI', Raspberry Pi based microscope platform
      Python
      •3•0•0•1•Updated Jan 18, 2021Jan 18, 2021

    • ImageAnalysisPractical

      Public
      Biomedical image analysis Engineering practical
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated May 19, 2020May 19, 2020

    • cockpit-lasers

      Public archive
      DEPRECATED: rolled into MicronOxford/microscope
      Python
      •2•0•0•0•Updated Jul 22, 2019Jul 22, 2019

    • OMXeditor

      Public
      Python
      •2•1•3•0•Updated Dec 17, 2018Dec 17, 2018

    • micron-website

      Public
      source for http://www2.bioch.ox.ac.uk/microngroup/micron_home.php
      PHP
      •3•0•0•0•Updated Nov 21, 2018Nov 21, 2018

    • microscope.tools

      Public
      A collection of tools related to microscopy and microscope control.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •4•2•0•0•Updated Aug 8, 2017Aug 8, 2017

    • cool

      Public
      Centroid Origin Optimising Localiser
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•1•1•0•Updated May 18, 2017May 18, 2017

    • OLID

      Public
      Python
      •1•0•0•0•Updated Apr 20, 2017Apr 20, 2017

    • specs

      Public
      Technical specifications for equipment, programs, and file formats.
      Perl
      •0•0•0•0•Updated Oct 6, 2016Oct 6, 2016

    • bumblebee

      Public
      converted to git from http://bumblebeeman.sourceforge.net/
      PHP
      •2•0•11•0•Updated Jul 13, 2016Jul 13, 2016

    • CUDA_SIMrecon

      Public
      Image reconstruction for structured-illumination microscopy implemented in CUDA
      C++
      •15•2•1•0•Updated Feb 4, 2016Feb 4, 2016

    • teaching

      Public
      Source for some classes given.
      TeX
      •0•0•0•0•Updated Mar 16, 2015Mar 16, 2015

    • omero_scripts_processing

      Public
      python module to abstract image processing in omero scripts
      Python
      •
      GNU Affero General Public License v3.0
      •1•1•0•0•Updated Sep 24, 2014Sep 24, 2014