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@NFDI4BIOIMAGE NFDI4BioImage

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    24 repositories

    • training

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •10•14•61•10•Updated Jul 22, 2025Jul 22, 2025

    • NFDI4BI-KG

      Public
      Repository for the NFDI4BIOIMAGE Knowledge Graph
      Python
      •
      MIT License
      •0•0•4•0•Updated Jul 8, 2025Jul 8, 2025

    • jupyterhub-bioimage-env

      Public
      Dockerfile
      •0•0•0•0•Updated Jun 3, 2025Jun 3, 2025

    • SlideInsight

      Public
      A collection of notebooks for gaining insights into presentation slides through multimodal AI models.
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •1•3•4•0•Updated May 30, 2025May 30, 2025

    • FAIR-IO

      Public
      Jupyter Notebook
      •
      Creative Commons Attribution 4.0 International
      •2•0•1•1•Updated May 23, 2025May 23, 2025

    • ul_rdm_git_demo

      Public
      The Unlicense
      •8•0•0•0•Updated May 15, 2025May 15, 2025

    • LEO

      Public
      Linking Electronic Lab Notebooks and other sources with OMERO objects
      nfdi4bioimage
      JavaScript
      •
      MIT License
      •0•0•5•0•Updated Apr 14, 2025Apr 14, 2025

    • n4bi-repo-challenge-2025

      Public
      Svelte
      •
      BSD 3-Clause "New" or "Revised" License
      •5•4•0•3•Updated Mar 31, 2025Mar 31, 2025

    • omero-vitessce

      Public
      OMERO.web plugin for the Vitessce multimodal data viewer.
      omeroomero-webmultimodalspatial-transcriptomicsvitesscespatial-omicsnfdi4bioimage
      Python
      •
      GNU Affero General Public License v3.0
      •0•9•0•0•Updated Feb 11, 2025Feb 11, 2025

    • BioHackathon24

      Public
      Repository for de.NBI24 BioHackathon project: "Increasing interoperability of bioimage dataset resources"
      TeX
      •
      GNU General Public License v3.0
      •2•0•1•0•Updated Feb 4, 2025Feb 4, 2025

    • omero-kg-benchmark

      Public
      Repository for subproject P4 "Endpoint Drafting and Testing", part of project "Increasing interoperability of bioimage dataset resources"at the 2024 deNBI BioHackathon
      benchmarkingrdfomerosparql-querysparql-endpointsbioimagingvirtual-knowledge-graph
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•2•0•Updated Feb 3, 2025Feb 3, 2025

    • Postcards-2024

      Public
      Illustrations were contracted by the Heinrich Heine University of Düsseldorf in the frame of the consortium NFDI4BIOIMAGE from Henning Falk for the purpose of education and public outreach (CC-BY)
      rdmnfdinfdi4bioimage
      Creative Commons Attribution 4.0 International
      •1•8•0•0•Updated Jan 14, 2025Jan 14, 2025

    • nfdi_search_engine

      Public
      search engine for the NFDI4BIOIMAGE materials(Docker Version)
      JavaScript
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•11•0•Updated Jan 8, 2025Jan 8, 2025

    • search_engine

      Public
      search engine for the NFDI4BIOIMAGE materials
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•16•0•Updated Oct 8, 2024Oct 8, 2024

    • irods_k8s

      Public
      PLpgSQL
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Sep 4, 2024Sep 4, 2024

    • licensing

      Public
      0•0•1•0•Updated Jul 11, 2024Jul 11, 2024

    • napari-plugin-template

      Public
      MIT License
      •0•0•3•0•Updated May 28, 2024May 28, 2024

    • ome-ld

      Public
      Linked Data support for the OME Model
      Python
      •3•0•0•0•Updated May 25, 2024May 25, 2024

    • omero-tabbles

      Public
      OMERO.web script to create Annotations in OMERO based on Tags from Tabbles
      omeroomero-scripts
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Apr 23, 2024Apr 23, 2024

    • git-demo-dataweek2024

      Public
      This repository serves as playground for the DataWeek Leipzig 2024
      The Unlicense
      •8•0•0•0•Updated Apr 15, 2024Apr 15, 2024

    • omero-scripts

      Public
      OMERO.web script to convert grey scale label images into OMERO Rois
      omeroomero-scripts
      Python
      •
      GNU General Public License v2.0
      •1•3•0•1•Updated Apr 10, 2024Apr 10, 2024

    • Cologne-Hackathon-2023

      Public
      Repository for documentation during and of the NFDI4Bioimage - TA3-Hackathon - UoC-2023 (in short: "Cologne Hackathon").
      Creative Commons Attribution 4.0 International
      •0•1•0•0•Updated Feb 22, 2024Feb 22, 2024

    • omero-arc-activities

      Public
      This repository collects, links and describes omero-arc interoperability activities.
      Creative Commons Attribution 4.0 International
      •0•0•5•0•Updated Feb 6, 2024Feb 6, 2024

    • BHG2023-OMERO-ARC

      Public
      Python
      •
      Creative Commons Attribution 4.0 International
      •4•0•0•0•Updated Feb 5, 2024Feb 5, 2024