Repositories list

• galaxy-tools

  Public
  Galaxy tools for Genome Annotation

  bioinformaticsgenome-annotationusegalaxy

  Python

  •

  MIT License

  •13•4•21•2•Updated Nov 28, 2025Nov 28, 2025

• apolpi

  Public
  Partial, faster reimplementation of Apollo API

  Python

  •

  MIT License

  •0•0•1•1•Updated Aug 4, 2025Aug 4, 2025

• gff-survey

  Public
  Python

  •0•1•1•0•Updated Apr 24, 2024Apr 24, 2024

• docker-chado

  Public
  Chado database container

  dockerbioinformatics

  Dockerfile

  •

  GNU General Public License v3.0

  •3•1•0•0•Updated Feb 23, 2024Feb 23, 2024

• python-apollo

  Public
  Python library for talking to Apollo API

  pythonapollojbrowse

  Python

  •

  MIT License

  •11•10•6•1•Updated Jan 31, 2024Jan 31, 2024

• galaxy-genome-annotation.github.io

  Public
  Shell

  •0•0•0•0•Updated Nov 15, 2023Nov 15, 2023

• chado-schema-builder

  Public
  compiles copies of the Chado database and dumps the SQL for use in other tools.

  automationbioinformaticsgenomics+ 1chado

  Python

  •1•3•0•0•Updated Dec 3, 2022Dec 3, 2022

• python-chado

  Public
  A Python library for interacting with Chado database

  Python

  •

  MIT License

  •8•8•0•0•Updated May 10, 2022May 10, 2022

• docker-tripal

  Public
  Docker container for Tripal

  PHP

  •11•10•5•0•Updated Mar 29, 2022Mar 29, 2022

• docker-galaxy-genome-annotation

  Public
  :whale: Galaxy Docker Image with Tools for Genome Annotation

  dockergenome-annotationgalaxy+ 1usegalaxy

  Dockerfile

  •

  MIT License

  •9•12•9•0•Updated Apr 20, 2021Apr 20, 2021

• docker-jbrowse

  Public
  Docker image of JBrowse Genome Browser

  hacktoberfest

  Shell

  •

  MIT License

  •17•15•1•0•Updated Apr 12, 2021Apr 12, 2021

• python-tripal

  Public
  A Python library for interacting with Tripal

  tripal

  Python

  •

  MIT License

  •2•3•2•0•Updated Aug 14, 2019Aug 14, 2019

• dockerized-gmod-deployment

  Public
  :whale::bar_chart::books: Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml

  dockerbioinformaticsapollo+ 4galaxyjbrowsechadotripal

  Python

  •

  GNU General Public License v3.0

  •9•5•8•0•Updated Dec 20, 2018Dec 20, 2018

• galaxy-circos-tool

  Public archive
  DEPRECATED: Merged into https://github.com/galaxyproject/tools-iuc/

  bioinformaticscircosusegalaxy

  Python

  •

  GNU General Public License v3.0

  •2•6•0•0•Updated Oct 25, 2018Oct 25, 2018

• docker-apollo

  Public
  :whale: Apollo 2.X Docker Image

  dockergeneticsdocker-compose+ 1genome-annotation

  Groovy

  •

  GNU General Public License v3.0

  •18•0•1•0•Updated May 29, 2018May 29, 2018

• apollo-permissions-manager

  Public archive
  Simple UI for managing Users, Groups, and Organisms in Apollo

  JavaScript

  •

  GNU Affero General Public License v3.0

  •0•3•0•0•Updated Mar 14, 2018Mar 14, 2018

• apollo-google-docs-integration

  Public
  Experimental work for a plugin to allow referencing data from Apollo. For genomes which are re-opened / re-numbered / etc. between drafting and publication, it …

  JavaScript

  •

  GNU Affero General Public License v3.0

  •0•1•0•0•Updated Jun 1, 2017Jun 1, 2017

• apollo-git-backup

  Public
  Backup an apollo instance to a git repository

  apollogenome-annotationjbrowse

  Python

  •

  GNU General Public License v3.0

  •0•2•0•0•Updated Jun 1, 2017Jun 1, 2017